A method for exhaustive similarity search of genomic positional expression.

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I carried out analyses of gene expression patterns using the cap analysis gene expression (CAGE) method for exploring systematic views of tanscriptomes. Counting the number of mapped CAGE tags for fixed-length regions allows determination of the genomic expression levels. I developed a novel algorithm which provides a novel view to the genome from the genomic positional expression, and also developed a method based on graph algorithm and statistical approach for discovering tissue-specific regulation of alternative transcripts through a genome-wide analysis.