Structural Interactome Studies from Computational and Bioinformatics Approaches
Structural Interactome Studies from Computational and Bioinformatics Approaches
批准号:
20370061
负责人:
NAKAMURA Haruki
金额:
$12.9万
依托单位:
依托单位国家:
日本
项目类别:
Grant-in-Aid for Scientific Research (B)
财政年份:
2008
资助国家:
日本
项目状态:
已结题
起止时间:
2008 至 2010
中文摘要
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英文摘要
For structural interactome study, which investigates the protein-protein interaction network based on their tertiary structures, we have constructed several different kinds of databases and made informatics analyses by identifying and predicting the interfaces, so that complex structural models have been predicted. In addition, for the intrinsically denatured proteins, we have successfully reproduced and analyzed their coupled folding and binding procedures as the stable states in the free energy landscapes from computational studies.
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Density functional study of roles of porphyrin ring in electronic structures of heme.
卟啉环在血红素电子结构中作用的密度泛函研究。
DOI:
--
发表时间:
2009
期刊:
International Journal of Quantum Chemistry 109
影响因子:
--
作者:
[Y.Takano, H.Nakamura]
通讯作者:
H.Nakamura
QM/MM分子動力学シミュレーションによる脂肪酸合成に関わるアシルキャリアー蛋白質のホスフォパンテティン化酵素反応の研究
QM/MM分子动力学模拟研究参与脂肪酸合成的酰基载体蛋白的磷酸酯酶反应
DOI:
--
发表时间:
2010
期刊:
影响因子:
--
作者:
[Helfand, B.T., Mendez, M.G., Murthy, S.N., Shumaker, D.K., Grin, B., Mahammad, S., Aebi, U., Wedig, T., Wu, Y.I., Hahn, K.M., Inagaki, M., Herrmann, H. Goldman, R.D, 安永卓生(共著), 中村春木]
通讯作者:
中村春木
光合成反応中心スペシャルペアの電子構造の蛋白質依存性
光合反应中心特殊对电子结构的蛋白质依赖性
DOI:
--
发表时间:
2010
期刊:
影响因子:
--
作者:
[Kimura T, Sakai M, Tabu K, Wang L, Tsunematsu R, Tsuda M, Sawa H, Nagashima K, Nishihara H, Hatakeyama S, Nakayama K, Ladanyi M, Tanaka S, Nakayama KI, 中村春木]
通讯作者:
中村春木
surFit : A Docking server of protein molecular surfaces
surFit:蛋白质分子表面对接服务器
DOI:
--
发表时间:
2009
期刊:
影响因子:
--
作者:
[Yoshimura A, Seki M, Kanamori M, Takeishi S, Tsurimoto T, Tada S, Enomoto T., Haruki Nakamura]
通讯作者:
Haruki Nakamura
蛋白質構造データバンク事業と国際的な展開
蛋白质结构数据库业务和国际扩张
DOI:
--
发表时间:
2009
期刊:
影响因子:
--
作者:
[土谷佳弘, 浅野知一郎, 中山啓子, 加藤友久, Michael Karin, 鎌田英明, 中村春木]
通讯作者:
中村春木
共 105 条
Development and validation of a new force field depending on protein structures for molecular dynamics simulations
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批准号:23657103
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项目类别:Grant-in-Aid for Challenging Exploratory Research
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资助金额:$2.41万
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财政年份:2011
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负责人:NAKAMURA Haruki
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依托单位:
Quantitative computational and informatics studies on protein-protein interaction systems based on their dynamic structures
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批准号:23370071
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项目类别:Grant-in-Aid for Scientific Research (B)
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资助金额:$12.65万
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财政年份:2011
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负责人:NAKAMURA Haruki
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依托单位:
Theortical study of free energy landscapes of biological macromolecules by the hybrid computation for electronic structure and molecular structure sampling
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批准号:18370063
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项目类别:Grant-in-Aid for Scientific Research (B)
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资助金额:$3.47万
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财政年份:2006
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负责人:NAKAMURA Haruki
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依托单位:
Theoretical studies on the electronic states of biological system, applying the effect of protein and solvent molecules.
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批准号:15570134
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项目类别:Grant-in-Aid for Scientific Research (C)
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资助金额:$2.3万
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财政年份:2003
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负责人:NAKAMURA Haruki
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依托单位:
Structural and Informatics Basis of Channel Protein Interactions
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批准号:12144206
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项目类别:Grant-in-Aid for Scientific Research on Priority Areas
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资助金额:$17.66万
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财政年份:2000
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负责人:NAKAMURA Haruki
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依托单位:
Application of Segmental Isotope Labeling Method for Protein NMR and Free Energy Calculation for Development of Inhibitors for Proteins.
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批准号:12558083
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项目类别:Grant-in-Aid for Scientific Research (B)
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资助金额:$8.58万
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财政年份:2000
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负责人:NAKAMURA Haruki
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依托单位:
Prediction of Protein Fold and Analysis of Protein Folding Procedure
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批准号:12680657
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项目类别:Grant-in-Aid for Scientific Research (C)
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资助金额:$2.3万
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财政年份:2000
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负责人:NAKAMURA Haruki
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依托单位: