Development of QM/MM hybrid method for strongly correlated systems and its applications to reaction centers of bioenzyemes
Development of QM/MM hybrid method for strongly correlated systems and its applications to reaction centers of bioenzyemes
批准号:
23550016
负责人:
YAMANAKA Shusuke
金额:
$2.5万
依托单位:
依托单位国家:
日本
项目类别:
Grant-in-Aid for Scientific Research (C)
财政年份:
2011
资助国家:
日本
项目状态:
已结题
起止时间:
2011 至 2013
中文摘要
2011年,介绍了光系统II的水氧化反应中心的结构。我们利用它们的X射线结构进行了计算,并公布了它们结构的电子和自旋结构的结果,其中我们研究了所有可能的氧化态和所有可能的自旋结构。据我们所知,这是第一篇关于光系统II的Mn团簇的计算结果的论文。随后,我们研究了自然轨道和几何变化,提出了氧化水分子的可能反应机理。另一方面,由于计算结果与实验结果之间略有矛盾,我们通过构建原始的锰配合物测试集,考察了锰配合物磁性描述的函数依赖性。我们还研究了Mn团簇的非共线磁性,提出了基于自旋密度线性响应函数的QM/MM边界准则。
英文摘要
In 2011, the structure of the the water oxydation reaction center of photosystem II is presented. We performed calculations with using their X-ray structure and published the results of electronic ans spin structures of their structure, in which we examined all possible oxidation states with all possible spin structures. To our knowledge, this is the first paper on computational results of the Mn clusters of photosystem II. Subsequently, we examined natural orbitals and geometry changes to propose the possible reaction mechanisms to oxidize the water molecules. On the other side, because there is slight contradiction between calculational results and experimental results, we examined functional dependency of the description of magnetism of Mn complexes with constructing original test sets of Mn complexes. We also examined noncollinear magnetism of Mn clusters and proposed a QM/MM boundary guideline based on linear response function of spin density.
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Ab initio study of magnetic interactions of manganese-oxide clusters
锰氧化物团簇磁相互作用的从头算研究
DOI:
--
发表时间:
2011
期刊:
Polyhedron
影响因子:
2.6
作者:
[K. Kanda, S. Yamanaka, T. Saito, T. Kawakami, Y. Kitagawa, M. Okumura, H. Nakamura, K. Yamaguchi]
通讯作者:
K. Yamaguchi
DOI:
--
发表时间:
2012
期刊:
影响因子:
--
作者:
[K. Kanda, S. Yamanaka, T. Saito, Y. Kitagawa, T. Kawakami, M. Okumura, K. Yamaguchi]
通讯作者:
K. Yamaguchi
The Nature of chemical bonds of the CaMn4O5cluster in oxygen evolving complex of photosystem II. Jahn-Teller distortion and its suppression by Ca doping in cubane structures
光系统 II 的放氧复合物中 CaMn4O5 簇化学键的性质。
DOI:
10.1002/qua.24280
发表时间:
2013
期刊:
Internat. J. Quantum Chem
影响因子:
--
作者:
[K. Yamaguchi, S. Yamanaka, H. Isobe, T. Saito, K. Kanda, Y. Umena, K. Kawakami, J. -R. Shen, N. Kamiya, M. Okumura, H. Nakamura, M. Shoji and Y. Yoshioka]
通讯作者:
M. Shoji and Y. Yoshioka
Locality and nonlocality of electronic structures of molecular systems : Toward QM/MM and QM/QM approaches
分子系统电子结构的定域性和非定域性:走向 QM/MM 和 QM/QM 方法
DOI:
--
发表时间:
2012
期刊:
AIP Conf. Proc
影响因子:
--
作者:
[S. Yamanaka, Y. Yonezawa, K. Nakata, S. Nishihara, M. Okumura, T. Takada, K. Yamaguchi, H. Nakamura]
通讯作者:
H. Nakamura
Towards reliable density functional ..
迈向可靠的密度泛函..
DOI:
--
发表时间:
2011
期刊:
影响因子:
--
作者:
[Takeshi Nishigaki, Izumi Ishigami, Satoru Nakashima, Kyoko Shinzawa-Itoh, Shinya Yoshikawa, Takashi Ogura, 山中秀介]
通讯作者:
山中秀介
共 45 条
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