Analysis of gene regulatory networks in Boolean models
Analysis of gene regulatory networks in Boolean models
批准号:
23700017
负责人:
TAMURA Takeyuki
金额:
$1.25万
依托单位:
依托单位国家:
日本
项目类别:
Grant-in-Aid for Young Scientists (B)
财政年份:
2011
资助国家:
日本
项目状态:
已结题
起止时间:
2011 至 2012
中文摘要
布尔网络(BN)是描述细胞基因调控关系的离散数学模型。虽然寻找BN的稳定状态和控制策略的问题是已知的NP-难的,他们往往是可解决的,由于最近的高性能计算vie精确算法和/或整数规划为基础的methods.In这项研究中,精确算法寻找周期2吸引子。此外,基于整数规划的方法被开发用于寻找单点吸引子、控制BN和控制吸引子的问题。
英文摘要
The Boolean network (BN) is a discrete mathematical model for describing regulatory relationship of genes in cells. Although problems for finding stable states of BNs and control strategies are known to be NP-hard, they are often solvable for middle size networks due to recent high performance computing vie exact algorithms and/or integer programming-based methods.In this research, exact algorithms for finding attractors of period 2 were developed. Furthermore, integer programming-based methods were developed for problems for finding singleton attractors, control of BNs, and control of attractors.
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DOI:
10.1007/978-3-642-31265-6_29
发表时间:
2012
期刊:
Lecture Note in Computer Science
影响因子:
--
作者:
[Tatsuya Akutsu, Takeyuki Tamura, Daiji Fukagawa, Atsuhiro Takasu]
通讯作者:
Atsuhiro Takasu
A polynomial-time algorithm for computing the maximum common subgraph of outerplanar graphs of bounded degree
有界外平面图最大公共子图的多项式时间算法
DOI:
--
发表时间:
2012
期刊:
影响因子:
--
作者:
[Takeyuki Tamura, Tatsuya Akutsu]
通讯作者:
Tatsuya Akutsu
Predicting essential genes via impact degree on metabolic networks
通过对代谢网络的影响程度预测必需基因
DOI:
--
发表时间:
2011
期刊:
影响因子:
--
作者:
[K. Makino, S. Tamaki, M. Yamamoto, Takeyuki Tamura]
通讯作者:
Takeyuki Tamura
論文リスト
论文列表
DOI:
--
发表时间:
期刊:
影响因子:
--
作者:
[]
通讯作者:
Efficient Exponential Time Algorithms for Edit Distance between Unordered Trees. Proc.
用于编辑无序树之间距离的高效指数时间算法。
DOI:
--
发表时间:
2012
期刊:
影响因子:
--
作者:
[Tatsuya Akutsu, Takeyuki Tamura, Daiji Fukagawa, Atsuhiro Takasu]
通讯作者:
Atsuhiro Takasu
共 18 条
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