Role of Chromatin Remodeling in Circadian Regulation

染色质重塑在昼夜节律调节中的作用

• 批准号: 6895893
• 负责人: WILLIAM J BELDEN
• 金额: $ 4.99万
• 依托单位: DARTMOUTH COLLEGE
• 依托单位国家: 美国
• 财政年份: 2004
• 资助国家: 美国
• 起止时间: 2004-06-01 至 2007-05-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/6895893
• 关键词: Neurospora; biofeedback; chromatin; chromatin immunoprecipitation; circadian rhythms; gene expression; genetic mapping; genetic promoter element; genetic regulation; histones; nucleosomes; photobiology; polymerase chain reaction; postdoctoral investigator; posttranslational modifications; site directed mutagenesis

DESCRIPTION (provided by applicant): Circadian regulation in Neurospora crassa is controlled in part by a negative feedback loop where the Frequency (FRQ) protein inhibits its own transcription through a direct interaction with the White Collar complex (WCC). Currently there is no information on chromatin organization at the frequency (frq) gene promoter and what, if any type of chromatin remodeling occurs during the circadian cycle. I propose to examine the role of chromatin remodeling in circadian regulation through three specific aims. First, I plan to map the nucleosome positions at the frq promoter over the circadian cycle and in response to light induction using ligation-mediated polymerase chain reaction (LM-PCR). Relative changes in nucleosome positions that occur will be confirmed by DNase I protection and restriction site accessibility assays. Secondly, I plan to determine the covalent modifications that occur on the amino-terminal tail domains of the histones using the chromatin immunoprecipitation (ChiP) assays. Finally, I will order the histone modifications that occur at the frq locus to develop a circadian regulated 'histone code'. The completion of these aims will further both the circadian biology and chromatin remodeling fields.

描述（由申请人提供）：粗糙脉孢菌的昼夜节律调节部分由负反馈环控制，其中频率（FRQ）蛋白通过与白色项圈复合物（WCC）直接相互作用抑制其自身的转录。目前还没有关于频率（frq）基因启动子的染色质组织的信息，以及在昼夜节律周期中是否发生任何类型的染色质重塑。我建议通过三个具体目标来研究染色质重塑在昼夜节律调节中的作用。首先，我计划映射的frq启动子在昼夜节律周期的核小体位置，并在响应光诱导使用连接介导的聚合酶链反应（LM-PCR）。发生的核小体位置的相对变化将通过DNA酶I保护和限制性位点可及性测定来确认。其次，我计划使用染色质免疫沉淀（ChIP）测定来确定组蛋白的氨基末端尾部结构域上发生的共价修饰。最后，我将命令发生在frq基因座的组蛋白修饰，以开发一个昼夜节律调节的“组蛋白密码”。这些目标的完成将进一步推动生物节律和染色质重塑领域。