Kinetoplastid SL RNA biogenesis

动质体 SL RNA 生物发生

• 批准号: 7024522
• 负责人: DAVID A CAMPBELL
• 金额: $ 36.39万
• 依托单位: UNIVERSITY OF CALIFORNIA LOS ANGELES
• 依托单位国家: 美国
• 财政年份: 2004
• 资助国家: 美国
• 起止时间: 2004-04-01 至 2009-03-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7024522
• 关键词: Leishmania; RNA; SDS polyacrylamide gel electrophoresis; Trypanosoma brucei; Trypanosomatina; bacterial proteins; bioinformatics; enzyme activity; fluorescent in situ hybridization; gene expression; host organism interaction; laboratory rabbit; methyltransferase; parasite infection mechanism; polymerase chain reaction; protein protein interaction; protozoa; spleen exonuclease

DESCRIPTION (provided by the applicant): Our research is aimed at understanding gene expression in the family Trypanosomatidae, which includes the parasitic protozoon's responsible for leishmaniasis, African Sleeping Sickness, and Chagas Disease. The focus is on the genesis and function of the spliced leader (SL) RNA, a small RNA that contributes the 5'-end sequence to every nuclear messenger RNA via a trans-splicing reaction. Trans-splicing, which is necessary for the conversion of polycistronic pre-messenger RNA (a likely consequence of the unusual genome organization found in kinetoplastids) into monocistronic mRNA, is not found in the human host or insect vector and thus represents a possible therapeutic target. This proposal outlines three complementary sets of experiments that detail the maturation pathway of the SL RNA common to Leishmania tarentolae and Trypanosoma brucei. 1) To refine the map of cis elements (SL RNA sequences and structures) necessary for accurate and efficient maturation and trans-splicing. Data obtained will allow the future identification of trans factors (protein and RNA) that interact with essential regions of RNA. 2) To isolate and examine the role of an XPO1-dependent nuclear export complex in SL RNA trafficking. 3) Experimental examination of the roles of a 3'-exonuclease and two ribose 2'-O- methyltransferases in the maturation of the 3' and 5' ends of the SL RNA, and bioinformatic identification and modeling of these proteins' interaction with the SL RNA. These three goals address discrete steps in the maturation of the SL RNA that determine its subsequent function. Specific inhibition of the trans-splicing pathway is lethal to the cell and thus a prime target for anti-parasite intervention.

描述（由申请人提供）：我们的研究旨在了解锥虫科的基因表达，该科包括导致利什曼病、非洲昏睡病和恰加斯病的寄生原虫。剪接先导RNA （slrna）是一种通过反式剪接反应为每个核信使RNA提供5'端序列的小RNA，其重点是剪接先导RNA的起源和功能。反式剪接是将多顺反子前信使RNA（可能是在着丝质体中发现的不寻常的基因组组织的结果）转化为单顺反子信使RNA所必需的，在人类宿主或昆虫载体中没有发现，因此代表了一个可能的治疗靶点。本提案概述了三组互补的实验，详细介绍了利什曼原虫和布鲁氏锥虫共同的SL RNA成熟途径。1)完善准确有效的成熟和反式剪接所需的顺式元件（SL RNA序列和结构）图谱。获得的数据将允许未来识别与RNA基本区域相互作用的反式因子（蛋白质和RNA）。2)分离并检测依赖于xpo1的核输出复合物在SL RNA转运中的作用。3)实验研究了1个3′-核酸外切酶和2个2′- o -甲基转移酶在SL RNA 3′和5′端成熟过程中的作用，以及这些蛋白与SL RNA相互作用的生物信息学鉴定和建模。这三个目标解决了SL RNA成熟过程中决定其后续功能的离散步骤。对反式剪接途径的特异性抑制对细胞是致命的，因此是抗寄生虫干预的主要目标。