Computational Biology and Genetics Of Malaria and Toxopl

研究的生物体是人类疟疾寄生虫，恶性疟原虫，以及相关的Apicomplexan寄生虫弓形虫，重点是全基因组方法，其遗传学和分子和生物表型。与实验室密切合作，针对基因和基因产物的结构、功能、相互作用和遗传学问题，包括药物和疫苗开发、抗药性和免疫反应逃避、寄生虫种群的遗传多样性和进化等问题，进行了计算机分析，包括应用若干新算法。这些分析包括遗传图谱，数量和群体遗传学，以及与其他广泛测序的寄生虫，病原体和真核生物基因组的比较方法。几种疟原虫在基因和蛋白质的残基组成上显示出极端的偏差。这些组成特性，连同低复杂性，重复，nongolobular和构象移动的部分的蛋白质的作用的问题，这些生物体的致病性和它们与哺乳动物宿主的相互作用的方面有关。正在研究的疟疾寄生虫生物学方面包括复杂抗药性的演变和机制、抗原结构和变异、免疫反应的逃避、基因组组织和基因表达的新方面。

The organisms studied are the human malaria parasite, Plasmodium falciparum, and the related Apicomplexan parasite Toxoplasma gondii, with emphasis on whole genome approaches to their genetics and molecular and biological phenotypes. Computer analyses, including application of several new algorithms, have been carried out, in close collaboration with experimental laboratories, in response to questions arising about the structures, functions, interactions and genetics of the genes and gene products, including those involved in drug and vaccine development,drug resistance and evasion of the immune response, and genetic diversity and evolution in parasite populations. These analyses include genetic mapping, quantitative and population genetics, and comparative approaches with other extensively sequenced parasites, pathogens and eukaryotic genomes. Several Plasmodium species show extreme bias in the residue compositions of both genes and proteins. These compositional properties, together with questions about the roles of low-complexity, repeat, nonglobular and conformationally mobile parts of proteins, are relevant to aspects of the pathogenicity of these organisms and their interactions with the mammalian hosts. Aspects of malaria parasite biology under study include the evolution and mechanisms of complex drug resistance, antigen structure and variation, evasion of the immune response, novel aspects of genome organization and gene expression.