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Identifying Regulation of Cell Cycle Gene Networks in E*

识别 E* 中细胞周期基因网络的调控

基本信息

批准号：
7337124
负责人：
UPINDER SINGH
金额：
$ 3.09万
依托单位：
STANFORD UNIVERSITY
依托单位国家：
美国
项目类别：
财政年份：
2006
资助国家：
美国
起止时间：
2006-02-01 至 2010-01-31
项目状态：
已结题

来源：
https://reporter.nih.gov/project-details/7337124
关键词：
Amebiasis Amebic colitis Biology Bispecific Antibody 2B1 Cell Cycle Cell Cycle Progression Cell Cycle Regulation Cell Nucleus Cell Proliferation Cell division Cell surface Colitis Collaborations Colon Colonic Diseases Condition Cyclins DNA Microarray Chip DNA Microarray format Data Disease Dominant-Negative Mutation Double-Stranded RNA Drug resistance Entamoeba dispar Entamoeba histolytica Enterobacteriaceae Enterocytes Environment Erythrocytes Erythrophagocytosis Eukaryota Eukaryotic Cell Facility Construction Funding Category Family Gene Expression Generations Genes Genetic Genome Genomics Genus Cola Goals Grant Hand Homologous Gene Human In Vitro India Infection Ingestion Institutes Invasive Laboratories Lead Ligand Binding Liver Abscess Medical Surveillance Methodology Methods Microarray Analysis Molecular Numbers Nutrient Parasites Parents Pathogenesis Pathway interactions Pattern Phagocytosis Phase Phenotype Quality Control Regulation Reproducibility Research Sequence Homology Signal Transduction Stimulus Stress Technology Transfer Testing Transcriptional Regulation United States National Institutes of Health Virulence Virulence Factors Work Writing base cdc Genes cohort deprivation genetic analysis in vivo insight interest member monolayer mouse model novel parent grant pathogen prevent research study response species difference tool

项目摘要

This research will be done primarily at the Bose Institute in Calcutta, India in collaboration with Anuradha Lohia as an extension of NIH grant R01AI 53724. The human pathogen Entamoeba histolytica is responsible for causing amoebic dysentery and liver abscesses. Infection of the human gut is quickly followed by proliferation and multiplication of the parasite, which may then lead to colonic disease. We are interested in identifying molecular factors regulating cell proliferation in this protist parasite, in an effort to devise new strategies to prevent amoebiasis. The goal of the parent proposal is to identify novel amoebic virulence factors by microarray based transcriptional profiling. The FIRCA supplement is written with Prof. Anuradha Lohia who has been studying the regulation of cell cycle progression Entamoeba histolytica. Results from Anuradha's laboratory in India have shown that in E. histolytica genome reduplication may occur without cell division and single nuclei may contain several genome contents during the proliferative phase (Gangopadhyay et al, 1997a; Das and Lohia, 2002). Therefore, unlike most eukaryotes the cell cycle of E. histolytica does not appear to be controlled by known checkpoint surveillance mechanisms. It would be important therefore to identify a global profile of genes that regulate cell cycle progression in E. histolytica. In this proposal we plan to use dsRNA interference (Kaur and Lohia, 2004) to down-regulate cell cycle homologues- Eh Cdks and cyclins, followed by transcriptional profiling using microarrays in order to identify groups of genes controlled by CDKs and cyclins in E. histolytica. This work has important implications for identifying novel aspects of cell cycle control in E. histolytica. .Additionally, this project is an ideal collaborative environment in which a main goal is technology transfer (use and anlaysis of microarray data) to the Lohia lab in India. Arrays as a post-genomic tools are powerful yet highly specialized, thus the "hands-on" use of this application by Lohia's group is an important component of this work.

这项研究将主要在印度加尔各答的Bose研究所与Anuradha合作进行 Lohia作为NIH资助R 01 AI 53724的扩展。人类病原体溶组织内阿米巴是负责造成阿米巴痢疾和肝脏公主。人体肠道感染后，寄生虫迅速增殖，从而导致结肠疾病。我们感兴趣的是鉴定调节细胞增殖的分子因子，在这种原生寄生虫的增殖，在努力设计新的战略，以防止阿米巴病。的目标本研究的主要目的是通过基于基因芯片的转录技术来鉴定新的阿米巴毒力因子侧写FIRCA补充是与教授阿努拉达Lohia谁一直在研究的规定写的溶组织内阿米巴阿努拉达在印度的实验室的结果表明，在E。溶组织菌基因组复制可在增殖过程中，单个细胞核可能含有几种基因组内容物，阶段（Gangopadhyay等人，1997 a; Das和Lohia，2002）。因此，与大多数真核生物不同，大肠溶组织菌似乎不受已知的检查点监视机制控制。这将是因此，重要的是要确定一个全球性的基因，调控细胞周期进程，在大肠杆菌。溶组织剂在这个提议中，我们计划使用dsRNA干扰（Kaur和Lohia，2004）来下调细胞周期同源物- Eh Cdks和细胞周期蛋白，然后使用微阵列进行转录谱分析，以确定 E.溶组织剂这项工作具有重要意义，鉴定E.溶组织剂此外，该项目是一个理想的协作环境，主要目标是技术转让（微阵列数据的使用和分析）印度的洛希亚实验室阵列作为后基因组工具是强大的，但高度专业化，因此， Lohia小组对该应用程序的“动手”使用是这项工作的重要组成部分。