PHOTOCHEMISTRY OF DNA NUCLEOBASES AND RELATED COMPOUNDS

DNA 核碱基及相关化合物的光化学

• 批准号: 7957381
• 负责人: MARTIN D SHETLAR
• 金额: $ 0.2万
• 依托单位: UNIVERSITY OF CALIFORNIA, SAN FRANCISCO
• 依托单位国家: 美国
• 财政年份: 2009
• 资助国家: 美国
• 起止时间: 2009-06-01 至 2010-05-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7957381
• 关键词: Amino Acids; Bromouracil; Carbon; Cell Death; Cells; Chemicals; Computer Retrieval of Information on Scientific Projects Database; Cytosine; DNA; DNA Damage; Digestion; Electrospray Ionization; Environment; Funding; Gene Mutation; Genomics; Grant; High Pressure Liquid Chromatography; Institution; Investigation; Life; Light; Mass Spectrum Analysis; Mediating; Minor; NMR Spectroscopy; Nucleosides; Photochemistry; Procedures; Proteins; Protons; Research; Research Personnel; Resources; Role; Source; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Spectrum Analysis; Thymine; UV induced; Ultraviolet Rays; United States National Institutes of Health; Uracil; Water; Work; absorption; adduct; base; chemical stability; interest; metaplastic cell transformation; nucleobase; ultraviolet

This subproject is one of many research subprojects utilizing the resources provided by a Center grant funded by NIH/NCRR. The subproject and investigator (PI) may have received primary funding from another NIH source, and thus could be represented in other CRISP entries. The institution listed is for the Center, which is not necessarily the institution for the investigator. Ultraviolet (UV) light is known to cause a number of effects after absorption by living cells, such as genetic mutation, cell death and cellular transformation. These latter types of damage are mediated, at least in part, by photoproducts formed in the genomic DNA of the cell. One main focus of our work is on the role of the minor base 5-methylcytosine (m5C) in mediating damage induced by absorption of light, although investigations of the reactivity of thymine (Thy), cytosine (Cyt) and halogenated uracils (e.g. 5-bromouracil) are also being carried out. Our primary aim is directed towards isolating and characterizing a number of photoproducts that we believe could be relevant to achieving a chemical understanding of UV-induced DNA damage. Among the compounds of current interest are the (6-4) adducts and Dewar adducts of m5C with Cyt and Thy, both in nucleobase and nucleoside form and on adducts formed with molecules in the environment of DNA in the cell (e.g. water, amino acids in proteins). These compounds are being prepared utilizing procedures that avoid conditions under which these compounds are unstable. High performance liquid chromatography (HPLC) is being used to isolate the various compounds in a pure state. They are being structurally characterized using proton and carbon-13 NMR spectroscopy, UV spectroscopy, electrospray ionization and MALDI mass spectrometry and, where appropriate, circular dichroic spectroscopy. Their chemical stability under conditions of DNA digestion is also being determined.

这个子项目是许多研究子项目中的一个 由NIH/NCRR资助的中心赠款提供的资源。子项目和 研究者（PI）可能从另一个NIH来源获得了主要资金， 因此可以在其他CRISP条目中表示。所列机构为 研究中心，而研究中心不一定是研究者所在的机构。 已知紫外线（UV）光在被活细胞吸收后引起许多效应，例如基因突变、细胞死亡和细胞转化。 这些后一种类型的损伤至少部分地由细胞基因组DNA中形成的光产物介导。我们工作的一个主要重点是次要碱基5-甲基胞嘧啶（m5 C）在介导光吸收引起的损伤中的作用，尽管胸腺嘧啶（Thy），胞嘧啶（Cyt）和卤代尿嘧啶（例如5-溴尿嘧啶）的反应性的调查也正在进行中。 我们的主要目的是针对隔离和表征的一些光产物，我们认为可能是相关的实现化学的理解紫外线诱导的DNA损伤。 目前感兴趣的化合物是m5 C与Cyt和Thy的（6-4）加合物和杜瓦加合物，两者都是核碱基和核苷形式，以及在细胞中DNA环境中与分子（例如水、蛋白质中的氨基酸）形成的加合物上。 这些化合物是利用避免这些化合物不稳定的条件的方法制备的。 高效液相色谱法（HPLC）用于分离纯态的各种化合物。 使用质子和碳-13 NMR光谱、UV光谱、电喷雾电离和MALDI质谱以及适当的圆二色性光谱对它们进行结构表征。它们在DNA消化条件下的化学稳定性也正在测定中。