Molecular mechanisms of myeloid suppressor genes on chromosome 5

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DESCRIPTION (provided by applicant): Therapy-related myeloid neoplasms (t-MNs) are late complications of cytotoxic therapy typically for primary malignant diseases. Heterozygous deletions of the long arm of chromosome 5, del(5q), are frequently noted in t-MN following cytotoxic treatment with alkylating agents, and are associated with loss or mutations of TP53. To identify a leukemia-related gene on chromosome 5, we previously delineated a 970 kb commonly deleted segment (CDS) of 5q31.2, and identified the first haploinsufficient myeloid suppressor gene within this CDS, EGR1. We also identified APC as another haploinsufficient myeloid suppressor gene on 5q. We developed an Mx1-Cre+ Apcfl/+-inducible model, and showed that Apc is essential for the maintenance and survival of hematopoietic stem and progenitor cells (HSPCs). Apcdel/+ mice develop a severe macrocytic anemia, recapitulating characteristic features of t-MN with a del(5q). Notably, concordant haploinsufficiency for Egr1 and Apc cooperates to accelerate anemia onset. We showed that cell intrinsic loss of Tp53 in HSPCs haploinsufficient for Egr1 and Apc led to the development of an aggressive AML in mice, representing the first mouse model for human del(5q) AML. We hypothesize that 5q contains one or more additional myeloid suppressor genes (cis mutations) that cooperate with EGR1 and APC haploinsufficiency, and that additional cooperating mutations (trans mutations) are required for leukemogenesis. The overall goal of this project is to identify cooperating mutations and genetic pathways leading to alkylating agent-induced t-MN with a del(5q). Through collaborations, we will compare genetic pathways identified by genomic analysis of t-MN patients and mouse models for the del(5q), as well as mouse models for the haploinsufficient genes involved in the - 7/del(7q) and loss of 17p, commonly seen together with the del(5q) in t-MN. In Aim 1, we will identify the molecular mechanisms of transformation by EGR1 by characterizing the role of EGR1 in hematopoiesis. Specifically, we will identify the transcriptional targets of EGR1 in HSPCs, and t-MNs with a del(5q), and examine the mechanism by which lesions on 5q and 7q cooperate. In Aim 2, we will identify genetic mutations that cooperate with haploinsufficiency of EGR1 and/or APC in the pathogenesis of myeloid neoplasms by characterizing the genomic pattern of myeloid neoplasms arising in mice with haploinsufficiency for Egr1, Apc, and Tp53, or ENU-treated Egr1+/- mice (an alkylating agent-induced myeloid neoplasm), and by evaluating the cooperative role of candidate myeloid suppressor genes on 5q, e.g., CSNK1A1, SPRY4, and the lysine specific deaminase, KDM3B. In conducting this work, we will generate genetically accurate and tractable in vivo models for preclinical studies, providing critical resources for investigating the fundamental problem of drug resistance in t-MN. Establishing the genetic pathways leading to t-MN may inform the development of biologically-based treatment strategies.