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Genome-Wide Association Study of Early Childhood Caries

儿童早期龋齿的全基因组关联研究

基本信息

批准号：
9761845
负责人：
Kimon Divaris
金额：
$ 119.59万
依托单位：
UNIV OF NORTH CAROLINA CHAPEL HILL
依托单位国家：
美国
项目类别：
财政年份：
2015
资助国家：
美国
起止时间：
2015-09-10 至 2021-08-31
项目状态：
已结题

来源：
https://reporter.nih.gov/project-details/9761845
关键词：
12 year old 3 year old 4 year old Address Adult Affect African African American Age American Area Behavior Behavioral Caring Characteristics Child Childhood Chronic Chronic Disease Clinical Clinical Data Collaborations Communities Community Health Systems Complex Coronary heart disease DNA Data Dental Dental Care Dental Enamel Hypoplasia Dental Plaque Dental caries Detection Diagnosis Diagnostic Disease Economically Deprived Population Economics Enrollment Epidemiology Ethnic group Etiology European Family Follow-Up Studies Funding Future General Anesthesia Genes Genetic Genetic Determinism Genetic Structures Genetic study Genome Genomics Genotype Head Start Program Health Healthcare Heritability Hispanics Human Infrastructure International Investigation Knowledge Latino Lesion Life Cycle Stages Low Income Population Measures Meta-Analysis Morbidity - disease rate Non-Insulin-Dependent Diabetes Mellitus North Carolina Nursery Schools Parents Pathway interactions Pattern Personal Satisfaction Phenotype Population Preschool Child Prevalence Preventive Preventive care Primary Dentition Procedures Protocols documentation Public Health Regulatory Element Reporting Research Risk Risk Factors Risk stratification Saliva Sample Size Sampling Sedation procedure Severities Social Impacts Suggestion Surveys System Techniques Testing Time Tooth Diseases Tooth structure Underrepresented Minority Visual system structure Vulnerable Populations age group aged base burden of illness cohort cost deciduous tooth density early childhood early onset economic cost economic impact epidemiology study experience falls follow-up genetic information genetic variant genome wide association study genome-wide high risk improved insight knowledge base microbiome analysis novel permanent tooth population based prevent programs public health relevance racial and ethnic racial disparity response restorative treatment risk variant sample collection secondary outcome social sociodemographics tooth surface trait

项目摘要

DESCRIPTION (provided by applicant): Early childhood caries (ECC) is the most common chronic disease of childhood, and one that is characterized by marked social, economic, and racial disparities. The prevalence of ECC in the US increased by 15% during the last 2 decades, and according to the most recent national data 28% of children ages 2-5 are affected. Importantly, management of ECC among young children often requires complex and costly restorative procedures with the use of advanced behavior management techniques including sedation and general anesthesia. ECC can have severe sequelae for children's general health and well-being, and confers important social and economic impacts on their families, communities, and the health system. Caries is a multifactorial disease with a substantial genetic component, which is estimated between 40-60%, but little is known regarding specific contributing genetic factors. A large-scale genome-wide association study (GWAS) involving a multi-cohort meta-analysis recently nominated 29 loci as associated with dental caries among adult, predominantly European-American (EA), populations. So far, the only GWAS examining caries in the primary dentition employed a sample of 1,300 3-12 year-old EA children and nominated 7 genes, 2 of which showed additional evidence of association in follow-up studies among children and adults. Here, we propose to conduct a large-scale GWAS of ECC involving a multi-ethnic community-based sample of 6,000 children ages 3 and 4. For Aim 1, we will undertake a comprehensive clinical dental characterization of a state-representative sample of approximately 6,000 children enrolled in Early Head Start and Head Start programs in North Carolina. We will use a tested clinical examination protocol including saliva sample collection for DNA extraction, and will use the latest International Caries Diagnosis System (ICDAS) visual diagnostic criteria to determine disease prevalence and severity. We will collect and store dental plaque samples for future microbiome analyses that will be funded separately. To identify genetic variants that are associated with ECC, in Aim 2, we will conduct a trans-ethnic GWAS of ECC and related traits, utilizing high-density genotyping, imputation to 1000 Genomes Project reference panels and advanced statistical approaches to leverage differences in genetic structure between racial/ethnic groups. In Aim 3, we will utilize publicly available GWAS data of early childhood and adult caries, to determine the racial/ethnic and age-group generalization/transferability of loci, genes, and gene sets/pathways identified in our study. Our group's experience in conducting dental epidemiologic studies among young children including an ongoing collaboration with EHS/HS and expertise in large-scale, multi-ethnic GWAS, create a unique opportunity to carry out this important investigation and advance the knowledge base of genomics of dental caries. The study will improve our understanding of ECC's epidemiology and genomic etiology, key knowledge to reduce the burden of disease in populations of young children, including those underrepresented in research.

描述（由申请人提供）：幼儿龋齿（ECC）是儿童期最常见的慢性疾病，其特征在于明显的社会，经济和种族差异。在过去的20年里，美国ECC的患病率增加了15%，根据最新的国家数据，28%的2-5岁儿童受到影响。重要的是，幼儿ECC的管理通常需要复杂而昂贵的恢复程序，并使用先进的行为管理技术，包括镇静和全身麻醉。幼儿保育会对儿童的总体健康和福祉产生严重的后遗症，并对其家庭、社区和卫生系统产生重要的社会和经济影响。龋病是一种多因素疾病，具有大量的遗传成分，估计在40- 60%之间，但对具体的遗传因素知之甚少。一项涉及多队列荟萃分析的大规模全基因组关联研究（GWAS）最近提名了29个位点与成年人（主要是欧洲-美国人（EA））人群中的龋齿相关。到目前为止，唯一一项检查乳牙龋齿的GWAS采用了1,300名3-12岁EA儿童的样本，并提名了7个基因，其中2个在儿童和成人的随访研究中显示了额外的相关证据。在这里，我们建议进行一个大规模的GWAS的ECC涉及一个多种族的社区为基础的样本的6,000名儿童年龄3和4。对于目标1，我们将对北卡罗来纳州参加早期开端和开端计划的约6,000名儿童的州代表性样本进行全面的临床牙科表征。我们将使用经过测试的临床检查方案，包括唾液样本采集， DNA提取，并将使用最新的国际龋齿诊断系统（ICDAS）视觉诊断标准，以确定疾病的患病率和严重程度。我们将收集和储存牙菌斑样本，用于未来的微生物组分析，这些分析将单独资助。为了识别与ECC相关的遗传变异，在目标2中，我们将进行ECC和相关性状的跨种族GWAS，利用高密度基因分型，对1000个基因组项目参考面板进行插补，并采用先进的统计方法来利用种族/种族群体之间的遗传结构差异。在目标3中，我们将利用公开的儿童早期和成人龋齿的GWAS数据，以确定我们研究中确定的基因座、基因和基因组/途径的种族/民族和年龄组泛化/可转移性。我们团队在幼儿中开展牙科流行病学研究的经验，包括与EHS/HS的持续合作以及在大规模、多种族GWAS方面的专业知识，为开展这项重要调查和推进龋齿基因组学知识基础创造了独特的机会。这项研究将提高我们对ECC流行病学和基因组病因学的理解，这是减少幼儿人群疾病负担的关键知识，包括那些在研究中代表性不足的人群。

项目成果

期刊论文数量（29）

专著数量（0）

科研奖励数量（0）

会议论文数量（0）

专利数量（0）

Comprehensive evaluation of methods for differential expression analysis of metatranscriptomics data.

DOI：
10.1093/bib/bbad279
发表时间：
2023-09-20
期刊：
Briefings in bioinformatics
影响因子：
9.5
作者：
通讯作者：

An Automated Machine Learning Classifier for Early Childhood Caries.

用于早期儿童龋齿的自动机器学习分类器。

DOI：
发表时间：
2021
期刊：
Pediatric dentistry
影响因子：
1.6
作者：
Karhade,DeeptiS;Roach,Jeff;Shrestha,Poojan;Simancas-Pallares,MiguelA;Ginnis,Jeannie;Burk,ZacharyJS;Ribeiro,ApoenaA;Cho,Hunyong;Wu,Di;Divaris,Kimon
通讯作者：
Divaris,Kimon

Marginalized zero-inflated negative binomial regression with application to dental caries.

DOI：
10.1002/sim.6804
发表时间：
2016-05-10
期刊：
Statistics in medicine
影响因子：
2
作者：
Preisser JS;Das K;Long DL;Divaris K
通讯作者：
Divaris K

Child Nutrition Patterns Are Associated with Primary Dentition Dental Caries.

儿童营养模式与乳牙龋相关。

DOI：
发表时间：
2021
期刊：
Pediatric dentistry
影响因子：
1.6
作者：
Tilton,ErinE;Keels,MarthaAnn;Simancas-Pallares,MiguelA;Quiñonez,RocíoB;Roberts,MichaelW;FerreiraZandona,AndreaG;Divaris,Kimon
通讯作者：
Divaris,Kimon

Guardian Reports of Children's Sub-optimal Oral Health Are Associated With Clinically Determined Early Childhood Caries, Unrestored Caries Lesions, and History of Toothaches.