Biometry and Microarray Core

生物测定和微阵列核心

• 批准号: 7659698
• 负责人: Dumitru Andrei Iacobas
• 金额: $ 5.17万
• 依托单位: UNIVERSITY OF CALIFORNIA, SAN DIEGO
• 依托单位国家: 美国
• 财政年份: 2008
• 资助国家: 美国
• 起止时间: 2008-08-01 至 2010-07-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7659698
• 关键词: Affect; Antibodies; Bioinformatics; Biometry; Brain; Chronic; Class; Complementary DNA; Condition; Consultations; Core Facility; Cultured Cells; Data; Databases; Deposition; Experimental Designs; Gene Expression; Gene Expression Alteration; Genes; Genetic Transcription; Genomics; Heart; Hypercapnia; Hypoxia; Injury; Journals; Kidney; Liver; Modification; Mus; Mutant Strains Mice; Oligonucleotides; Organ; Oxygen; Peer Review; Phenotype; Process; Protein Array; Protein Hybridization; Proteins; Proteome; Proteomics; Publications; Quality Control; RNA; Research Design; Research Personnel; Specimen; Statistical Methods; Time; Tissues; Training; Transgenic Mice; Week; base; cDNA Arrays; computerized data processing; design; functional genomics; interest; mathematical model; programs; protein protein interaction; research study; transcriptomics

The Computational and Functional Genomics Core will serve all projects, assisting the investigators in research design and data processing and management, as well as in all technical aspects of microarray experiments. A major activity will consist of designing and processing the results of cDNA, oligonucleotide, protein and antibody array experiments by which to analyze alteration of gene expression, protein abundance and protein-protein interaction within specimens of mice exposed to hypoxia or hypercapnia. The Specific Aims of this Core facility are as follows: 1) To provide consultation, training and technical and bioinformatic assistance in all aspects of genomic studies, from experimental design and RNA and protein hybridization with the arrays to quality control, data processing and management. 2) To assist the projects to deposit their microarray data in the GEO database of NCBI, to organize and maintain transcriptomic and proteomic dbases of hypoxia effects in wildtype and in genetically modified mice to probe specific mechanisms for adaptation or injury and include these databases into the website of the Program Project after publication in peer-reviewed journals. 3) To provide consultation and training in the use of advanced statistical methods and mathematical modeling and to assist investigators in research design, data processing and management.

计算和功能基因组学核心将服务于所有项目，协助研究人员进行研究设计和数据处理和管理，以及微阵列实验的所有技术方面。主要活动将包括设计和处理cDNA、寡核苷酸、蛋白质和抗体阵列实验的结果，通过这些实验来分析暴露于缺氧或高碳酸血症的小鼠样本内的基因表达、蛋白质丰度和蛋白质-蛋白质相互作用的改变。该核心融资的具体目标如下： 1)在基因组研究的各个方面提供咨询，培训和技术和生物信息学援助，从实验设计和RNA和蛋白质与阵列杂交到质量控制，数据处理和管理。 2)协助项目将微阵列数据存款NCBI的GEO数据库，组织和维护野生型和转基因小鼠缺氧效应的转录组学和蛋白质组学数据库，以探索适应或损伤的特定机制，并在同行评议期刊上发表后将这些数据库纳入项目网站。 3)在使用先进的统计方法和数学建模方面提供咨询和培训，并协助研究人员进行研究设计，数据处理和管理。