Characterization fo Fe(II)alpha-ketoglutarate-dependent hydroxylases

Fe(II)α-酮戊二酸依赖性羟化酶的表征

• 批准号: 7869489
• 负责人: ROBERT P HAUSINGER
• 金额: $ 10.5万
• 依托单位: MICHIGAN STATE UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2009
• 资助国家: 美国
• 起止时间: 2009-07-16 至 2010-03-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7869489
• 关键词: Alkanesulfonates; Biochemical; Chemicals; Chemistry; Chromatin; Computer-Assisted Image Analysis; DNA; Environment; Enzymes; Escherichia coli; Family; Family member; Heme Iron; Herbicides; Homologous Gene; Human; Hydroxylation; Investigation; Knowledge; Laboratories; Medical; Medicine; Mixed Function Oxygenases; Modification; Mononuclear; Mutagenesis; Property; Proteins; Reaction; Research; Research Personnel; Role; Side; Site; Structure; Testing; Variant; Xanthines; alpha ketoglutarate; base; demethylation; inhibitor/antagonist; insight; mutant; programs; protein structure; repair enzyme; taurine-alpha-ketoglutarate dioxygenase

DESCRIPTION (provided by applicant): Enzymes containing mononuclear non-heme iron sites catalyze a diverse array of reactions that are significant to medicine and to the environment. The studies described in this proposal focus on the largest group of non-heme iron enzymes, the Fe(ll)- and alpha-ketoglutarate (aKG)-dependent hydroxylases. We seek to better define the hydroxylase reaction intermediates, enhance our understanding of the protein features involved in substrate recognition, and expand our knowledge of the functional roles of related family members. The specific aims include: (1) Use variants of the best-studied representative of this enzyme family, the sulfonate-metabolizing enzyme TauD, to spectroscopically analyze the Fe(IV)-oxo intermediate, examine other catalytic species, and to determine mutant protein structures. Also, investigate TauD interactions with inhibitors and study quantitatively the self-hydroxylation chemistry of this enzyme to test hypotheses regarding the role of the enzyme side chain modification reactions. (2) Elucidate the interactions of the E. coli DMA-repair enzyme AlkB with its substrate, methylated DNA, and investigate the roles of several human homologues. (3) Structurally and spectroscopically characterize the herbicide-degrading enzyme TfdA, and determine the basis for the opposite enahtiospecificities of two related enzymes, RdpA and SdpA, by using structural and mutagenesis approaches. (4) Define the structure, biochemical properties, and spectroscopically accessible catalytic intermediates of a newly identified Fe(ll)/aKG-dependent hydroxylase that oxidizes xanthine. (5) Identify the function of the E. coli Gab protein and spectroscopically examine its catalytic intermediates. (6) Explore the potential for carefully selected Fe(ll)/aKG hydroxylase family members to function in criromatin demethylation. The first three aims continue ongoing investigations in the laboratory, while the latter three aims present new research directions. Insights gained from these studies will be useful in understanding the substrate recognition features and chemical mechanisms of a large number of enzymes, including many less tractable examples that have direct medical relevance.

描述（由申请人提供）：含有单核非血红素铁位点的酶催化对医学和环境具有重要意义的各种反应。该提案中描述的研究集中在最大的非血红素铁酶组，Fe（II）-和α-酮戊二酸（aKG）-依赖性羟化酶。我们寻求更好地定义羟化酶反应中间体，提高我们对底物识别所涉及的蛋白质特征的理解，并扩大我们对相关家族成员功能作用的认识。具体目标包括：（1）使用该酶家族中研究得最好的代表酶--磺酸盐代谢酶TauD的变体，光谱分析Fe（IV）-氧代中间体，检查其他催化物质，并确定突变蛋白质结构。此外，研究TauD与抑制剂的相互作用，并定量研究这种酶的自羟基化化学，以测试有关酶侧链修饰反应作用的假设。(2)阐明了E.大肠杆菌DNA修复酶AlkB与其底物甲基化DNA的关系，并研究了几种人类同源物的作用。(3)对除草剂降解酶TfdA进行了结构和光谱表征，并通过结构和诱变方法确定了两种相关酶RdpA和SdpA的相反enahtiospecificities的基础。(4)定义结构，生化特性，和光谱可访问的催化中间体的一个新确定的铁（II）/aKG依赖性羟化酶，氧化黄嘌呤。(5)明确E. coliGab蛋白，并对其催化中间体进行了光谱分析。(6)探索精心选择的Fe（II）/aKG羟化酶家族成员在criromatin去甲基化中发挥作用的潜力。前三个目标继续在实验室进行的研究，而后三个目标提出了新的研究方向。从这些研究中获得的见解将有助于理解大量酶的底物识别特征和化学机制，包括许多具有直接医学相关性的不太容易处理的例子。