基于内标准基因的云南野生菌等温检测新技术研究
批准号:
31801635
项目类别:
青年科学基金项目
资助金额:
27.0 万元
负责人:
商颖
依托单位:
学科分类:
食品质量与安全检测
结题年份:
2021
批准年份:
2018
项目状态:
已结题
项目参与者:
韩鹏、胡永丹、单露英、郑实、李银娇
中文摘要
野生菌种属鉴定及快速检测,是开发种质资源、防止毒蕈中毒的关键技术。云南野生菌资源丰富,食入未知野生菌而导致中毒时有发生,由于形态学鉴定易受外界因素影响、难区分形态差异小的菌株以及rDNA-ITS方法的成功率取决于阳性样品种类、无法区分混合物等缺点,基于内标准基因在生物源成分鉴定的优势,筛选野生菌内标准基因以进行种属鉴定。同时,对同种野生菌同段DNA序列进行SNP筛选,以实现野生菌种内鉴定。等温扩增是应用较广的快检手段,申请人开发的SUP-MLPA可实现高通量特异性检测,特别是SNP检测。但MLPA为变温扩增,为满足等温过程,本研究改进其反应体系。根据内标准基因和SNP位点设计引物和探针,优化It-MLPA反应条件,建立野生菌定性和Taqman探针定量等温快速检测体系。该研究一方面提高野生菌种属鉴定准确性,为其中毒的临床诊断提供依据;也为野生菌乃至更多食品生物源掺假提供精准快速的检测方法。
英文摘要
The species-specific identification and rapid detection of the wild mushrooms are the key techniques for development of germplasm resources and prevention of toadstool poisoning. Yunnan Province is a region rich in wild mushrooms, and the poison incident caused by the ingestion of unknown wild fungus usually happens. There are lots of disadvantages in the existed mushroom identification methods, including morphological identification and rDNA-ITS analysis, such as vulnerable to the external factors, difficult to distinguish the strains with little differences and the mixed samples, and the rate of the success is mainly depended on the types of positive samples. Based on the advantage of endogenous reference gene in the biological component identification, the species-specific endogenous reference genes of the wild mushrooms are screened. At the same time, the SNP sites on the same DNA sequence within the same species of wild mushroom are selected to realize the intraspecific identification. The isothermal amplification is widely used in the on-site rapid detection, the SUP-MLPA developed by the applicant have a high throughput and excellent specificity, especially for detecting SNP site. However, MLPA is not an isothermal amplification, in order to satisfy the rapid detection, the reaction system is improved. The primers and probes are designed based on the sequences of the endogenous reference genes and SNPs, the isothermal rapid qualitative and quantitative detection technique with the help of Taqman probe is established through optimizing the conditions. While this study can effectively enhance the accuracy of the species-specific identifications of the wild mushrooms and provide the technical support for the clinical diagnosis of the toadstool poisoning; on the other hand, the established quantitative It-MLPA detection can provide a specific, time- and cost- saving method for the biological adulteration in wild mushrooms, and even in more agricultural products.
在野生菌鉴定技术中,形态学鉴定易受外界因素影响、难区分形态差异小的菌株,rDNA-ITS方法存在成功率取决于阳性样品种类、无法区分混合样品等缺点,而内标准基因在生物源成分鉴定的优势,但尚未见其在云南野生食用菌内标准基因的研究。同时,现场可视化快速检测是食品安全检测和食品生物源性成分精准鉴定的趋势,现有的快速检测技术存在特异性差、灵敏度不高、依赖进口设备等缺点,因此,亟需开发特异性好、可视化便利、成本低的现场可视化等温检测新技术。.经过三年的持续研究,基本上实现了预期的科研目标。本项目主要研究内容包括:筛选云南特色野生食用菌和人工种植食用菌的内标准基因;针对已筛选的内标准基因,分别建立了相应的定性、定量检测技术体系;针对松茸内标准基因开发了基于LAMP的等温快速检测技术,并结合侧流层析实现可视化快速检测;开发了等温连接探针结合HCR水凝胶的新型等温检测技术,经过反应条件优化,确定其最佳反应条件。.基于以上研究内容,取得的主要研究结果包括:.(1)筛选出美网柄牛肝菌、松茸、鸡枞菌等3种云南特色野生食用菌及金针菇、杏鲍菇和香菇等3种人工种植食用菌的内标准基因,具有良好的种内非特异性和种间特异性。.(2)采用两种限制性核酸内切酶对野生菌松茸的内标准基因进行地高辛标记的Southern blot分析,确定松茸内标准基因的拷贝数为单拷贝。.(3)针对已筛选6种野生菌的内标准基因,分别建立了相应的定性、定量PCR检测技术体系,并确定各检测体系的检测灵敏度;.(4)通过对LAMP的影响因素进行优化,建立了松茸内标准基因pol最佳等温定性定量LAMP检测体系;同时对核酸试纸条的反应时间和缓冲液种类进行优化,建立了针对pol基因的LAMP-胶体金核酸试纸条检测体系,并确定各检测体系的灵敏度。.(5)通过优化等温链接酶、连接时间、连接温度、连接探针浓度、发夹浓度、凝胶时间等条件,建立了等温连接依赖探针结合HCR水凝胶的新型等温可视化检测技术。
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DOI:
10.1111/jfs.12800
发表时间:
2020-04
期刊:
Journal of Food Safety
影响因子:
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作者:
[Shan Luying, Li Yinjiao, Zheng Shi, Wei Yuanmiao, Shang Ying]
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DOI:
10.1007/s12161-021-02043-y
发表时间:
2021-05
期刊:
Food Analytical Methods
影响因子:
2.9
作者:
[Zhang Chen, Lei Zhan, Li Yinjiao, Yi Lunzhao, Shang Ying]
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DOI:
10.1016/j.foodchem.2021.131803
发表时间:
2021
期刊:
Food Chemistry
影响因子:
8.8
作者:
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DOI:
10.3390/antibiotics8030151
发表时间:
2019-09-01
期刊:
ANTIBIOTICS-BASEL
影响因子:
4.8
作者:
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通讯作者:
Shang, Ying
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DOI:
10.3390/molecules24030455
发表时间:
2019-02-01
期刊:
MOLECULES
影响因子:
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作者:
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通讯作者:
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CRISPR-缺口切割探针-HCR级联驱动微流控快检米面制品中蜡样芽孢杆菌及其生物膜破解研究
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批准号:32560604
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项目类别:地区科学基金项目
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资助金额:32.00万元
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批准年份:2025
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负责人:商颖
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依托单位:
基于功能核酸的鲜切果蔬中食源性致病菌高通量快速检测传感器的研究
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批准号:--
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项目类别:地区科学基金项目
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资助金额:33万元
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批准年份:2022
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负责人:商颖
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依托单位:
国内基金
海外基金