基于配体分子3MLCT态发光性质研究[Ru(phen)2dppz]2+与人体端粒i-Motif DNA相互作用机理
批准号:
22103007
项目类别:
青年科学基金项目(C类)
资助金额:
30.0 万元
负责人:
王英辉
依托单位:
学科分类:
化学动力学
结题年份:
2024
批准年份:
2021
项目状态:
已结题
项目参与者:
王英辉
中文摘要
研究DNA与配体分子相互作用为设计DNA结构探针,及以DNA为靶点的抗肿瘤药物等提供理论依据。因为[Ru(phen)2dppz]2+明显的分子光开关效应,一直是该领域研究的焦点。四链体DNA空间立体结构多样,还可通过抑制端粒酶活性阻碍肿瘤细胞增殖,是一个很好的研究配体与DNA相互作用的体系。然而,[Ru(phen)2dppz]2+与四链体DNA相互作用的研究十分匮乏。所以,本项目拟以[Ru(phen)2dppz]2+的3MLCT态发光指数作为探针,并结合稳态光谱,系统研究rac、Λ和Δ-[Ru(phen)2dppz]2+与不同构型人体端粒i-Motif DNA单体及二聚体的结合模式,全面揭示[Ru(phen)2dppz]2+与i-Motif DNA的相互作用机理。该项目可为研究DNA与配体相互作用提供有效的实验方法,还有助于深入认识四链体DNA抑制端粒酶活性、调节致癌基因表达等科学问题。
英文摘要
Since the binding of ligand molecules and DNA tetraplex (G-quadruplex and i-Motif DNA) could inhibit the reactivity of telomere enzyme and control the oncogene expression, the investigation on the interaction mechanism between them may provide valuable information for the rational design of DNA probes and anticancer drugs. Comparing with B-DNA duplex, the structure of DNA tetraplex are quite different such as hydrogen-bonding structure, base stacking as well as the ability of water accessible. On the basis of structure characters, the interaction mechanisms of ligand molecules and DNA tetraplex are anticipated to be entirely different with B-DNA. Obviously, research on the interaction mechanisms of ligand molecules and DNA tetraplex has more significant importance. Ruthenium complexes [Ru(phen)2dppz]2+, which reveals obviously light switch effect, have attracted significant attention in this field. Until now, although some studies about the interaction between [Ru(phen)2dppz]2+ and DNA tetraplex have been reported, it still remains elusive to a large extent for the interaction mechanism. This may originate from the absence of interpretation for enormous problems in disclosing the interaction mechanism, such as the binding ratio, the isomer selectivity or binding constants and so on. The techniques on the research of interaction mechanism between ligand molecules and DNA tetraplex are also thought to be limiting the development in this field. Thus, we are motivated to investigate the binding mechanisms of monomeric and dimeric i-Motif DNA and [Ru(phen)2dppz]2+ by detecting the luminescence dynamics of 3MLCT of [Ru(phen)2dppz]2+ using transient emission spectroscopy, and combining with other methods such as UV-vis absorption, fluorescence and CD spectroscopy. Our results are anticipated to not only illustrate the interaction mechanism of [Ru(phen)2dppz]2+ binding to both the monomer and dimer of i-Motif DNA, but also provide a novel dynamic experimental method for investigating the interactions mechanism of DNA and ruthenium complexes.
研究DNA与配体分子相互作用为设计DNA结构探针,及以DNA为靶点的抗肿瘤药物等提供理论依据,然而近期的研究显示:配体分子可与DNA发生电子转移或与其产生的活性氧物质反应,导致DNA氧化性损伤改变其结构,继而影响其与DNA相互作用。基于此,本项目使用DFT系统研究了G-四链体和三链DNA中鸟嘌呤(G)碱基与羟基自由基(•OH)的反应机理,并揭示双链中8-oxoG•+衰变为质子化5-OH-8-oxoG以8-oxoA•+在自由和双链环境中的脱质子反应机理。结果显示:DNA二级结构极大的影响了•OH与G碱基的反应,在G-四链体和三链DNA中,•OH与G碱基反应可生成中性自由基G(N2-H)•,而非G(N1-H)•,且主要通过直接夺氢方式,与自由G碱基中通过C4/C5加成/消除不同;应该注意:在G-四链体DNA中,C8加成生成8-oxoG路径决速步能垒(3.7 kcal/mol)低于直接夺氢路径生成G(N2-H)•(6.7 kcal/mol),为主反应路径;反平行三链显示了相同的趋势,C8加成路径为 0.8 kcal/mol,直接夺氢路径为8.0 kcal/mol;但在平行三链中,C8加成路径能垒(6.4 kcal/mol)高于直接夺氢路径(无势垒)。8-oxoG•+在双链中会失去N7-H形成8-oxoG(-H7)•,其被氧化形成 8-oxoG(-H7)+,因氢键的限制,8-oxoG(-H7)+不会失去N1-H,而是直接发生水合反应生成质子化的5-OH-8-oxoG。在自由8-oxoA•+中,N7-H酸性最强,但8-oxoA•+脱N9-H能垒最低,且质子转移至邻近水为分步过程,氢键环境也可影响8-oxoA•+脱自由质子反应。这些研究结果清楚的显示了氧化损伤对于DNA二级结构的影响,可为以DNA为靶点的抗肿瘤药物设计提供理论依据,也可解释在基因区域易形成非B型DNA结构的序列容易成为突变的热点区域等生物学问题,特别是在癌症环境下。
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