新型WDR5蛋白Win site抑制剂的合理设计、合成及其抗肿瘤活性研究
批准号:
82103981
项目类别:
青年科学基金项目(C类)
资助金额:
30.0 万元
负责人:
陈维琳
依托单位:
学科分类:
合成药物化学
结题年份:
2024
批准年份:
2021
项目状态:
已结题
项目参与者:
陈维琳
中文摘要
WDR5作为一种表观调控因子,尤其通过Win site与组蛋白甲基转移酶MLL1相互作用,参与众多肿瘤的发生、发展过程。但WDR5 Win site抑制剂研究尚处于起步阶段,目前没有药物进入临床研究。本项目拟以申请者前期筛选获得的新骨架WDR5 Win site抑制剂—雷贝拉唑为苗头化合物,深度解析苗头化合物与Win site的结合模式,分区域对苗头化合物进行合理结构优化,探讨构效关系,获得结构新颖、活性优异、成药性良好的WDR5抑制剂;探索抑制剂对WDR5-MLL1相互作用的调控功能,阐明作用机制;应用活性优异的抑制剂扩大对肿瘤细胞株的抗增殖活性筛选;最后构建抑制剂敏感的肿瘤细胞裸鼠移植瘤模型,探索抑制剂的体内抗肿瘤活性。该研究不仅丰富了WDR5 Win site小分子抑制剂的化学结构类型,还为WDR5作为新型抗肿瘤靶标的成药性提供理论依据,同时发掘质子泵抑制剂潜在的老药新用临床用途。
英文摘要
WDR5 is an epigenetic regulator that has received considerable attention as a cancer target. The most obvious route to pharmacologically inhibit WDR5 is via the Win site. Although the functions of the Win site are not fully understood, it is clear that it plays an important role in the HMT activity of complexes carrying the MLL1 protein. However, only few chemical structure types of Win site inhibitors were reported, which leads to the unclarity binding mode analysis between blockers and WDR5 protein. To date, the inhibitors have not entered clinical studies and even lack in vivo efficacy studies. Here, Rabeprazole, discovered as a WDR5 Win site inhibitor by our group using cellular-based method and fluorescence polarization-based screening, is chosen as a hit compound for further optimization. The X-ray co-crystal structure analysis or the docking study reveals the binding interactions between Rabeprazole and WDR5 at the Win site, which contributes to the optimization of structure-based drug design approach to obtain novel scaffold compounds with high affinities, high cellular activities against MLL fusion leukemia cell lines and favorable physicochemical properties. The analysis of structure-activity and structure-property relationships is informative for the subsequent development of small molecule blockers. Then we will verify whether the inhibitors are able to engage the Win site of WDR5 in cells and specifically block interaction of MLL1-WDR5 protein-protein interaction, and modulate the HMT activity of MLL1 complex and downstream genes. Next, we will further assess whether blocking the Win site of WDR5 by a small molecule can inhibit the proliferation of other cancer cells, such as leukemia cells containing different p53 status. We would further examine the metabolic stability of inhibitors in vitro and pharmacokinetic profiles. Finally, compounds with the potent inhibitory activity and drug-like properties both in vitro and in vivo, are further assessed in xenograft model to examine their antitumor efficacy and the mechanism in vivo. This project not only enriches the chemical structure library of WDR5 small molecule inhibitors, but also provides theoretical basis for WDR5 serving as a new anti-tumor target. This study also provides new insight for the drug reposition of proton pump inhibitors.
WDR5作为一种表观调控因子,尤其通过Win site与组蛋白甲基转移酶MLL1相互作用,参与众多肿瘤的发生、发展过程。但WDR5 Win site抑制剂研究尚处于起步阶段,目前没有药物进入临床。目前已有WDR5 Win site多肽抑制剂和小分子抑制剂被报道,然而,WDR5蛋白Win site小分子抑制剂化学结构多样性不足,导致其蛋白空腔结合模式分析不足,致使高效发现并设计小分子抑制剂存在较大的困难针对WDR5 Win site抑制剂骨架结构类型少,蛋白空腔结合模式分析不足等问题,我们开展了两部分研究工作,其一:我们通过细胞抗增殖活性和荧光偏振实验高通量实体筛选得到了具有WDR5抑制活性的苗头化合物质子泵抑制剂雷贝拉唑,对苗头化合物分区域进行合理改造与优化,共设计并合成了结构新颖的30个目标化合物,通过荧光偏振(FP)测试了目标化合物对WDR5蛋白的抑制活性,并详细探讨了构效关系,随后挑选了部分活性较好的化合物利用CCK8比色法测试了该类衍生物对混合系白血病肿瘤细胞的抑制效果,依据所得的优势化合物,我们利用Western Blot评价了该类化合物在细胞内抑制MLL复合物后,对H3K4甲基化功能的影响;利用RT-PCR验证化合物在细胞中对甲基化后下游基因(HOXa9, Meis1);利用细胞流式技术测试该类化合物诱导肿瘤细胞的凋亡活性,最终得到2个结构新颖、活性优异的全新骨架的化合物,也有望开发质子泵抑制剂的老药新用用途。第二:我们通过分析已报道的高活性的WDR5蛋白抑制剂OICR-9429与WDR5蛋白的共晶结构(PDB:4Q1L),发现该联苯骨架的两个苯环距离Cys261的距离较近,分别为4.2 Å和4.7Å,因此我们尝试以申请者前期发现的高活性的联苯类化合物DDO-2117为苗头化合物,根据前期获得的构效关系,通过连接不同长度的侧链,共设计并合成了8个潜在的共价抑制剂,期望能与Cys261发生共价结合,从而增强活性,降低毒性,也有望开发出WDR5蛋白的首个共价抑制剂。
国内基金
海外基金