lncRNA-G018548结合PTBP1蛋白调控Smad4可变剪接促进人牙髓干细胞成牙本质向分化的机制研究
批准号:
82100996
项目类别:
青年科学基金项目(C类)
资助金额:
30.0 万元
负责人:
陈昭
依托单位:
学科分类:
牙体牙髓及根尖周组织疾病
结题年份:
2024
批准年份:
2021
项目状态:
已结题
项目参与者:
陈昭
中文摘要
牙髓干细胞(hDPSCs)成牙本质向分化形成修复性牙本质,是牙髓损伤修复的关键。长链非编码RNA(lncRNA)在间充质干细胞的多向分化过程中发挥关键作用,但其与蛋白结合调控hDPSCs成牙本质向分化尚无报道。申请人预实验发现hDPSCs成牙本质向分化过程中lncRNA-G018548表达上调,且细胞实验证实其促进hDPSCs成牙本质向分化;生物信息学预测及RIP实验证实G018548与蛋白PTBP1结合;RNA-seq筛选出二者共同差异表达的靶基因Smad4,且TGF-β通路显著富集;DEX-seq分析表明Smad4在过表达G018548和过表达PTBP1的hDPSCs中发生可变剪接。本项目将在前期研究基础上,深入探讨G018548与蛋白PTBP1结合后调控Smad4可变剪接进而促进hDPSCs成牙本质向分化具体作用机制,并结合体内模型进行验证,为牙本质再生及活髓保存提供新思路。
英文摘要
Human dental pulp stem cells (hDPSCs) differentiate into dentin to form restorative dentin, which is the key to repair dental pulp injury. Long-chain non-coding RNA(lncRNA) plays a key role in the multi-directional differentiation of mesenchymal stem cells, but it has not been reported that its combination with protein regulates the odontoblast differentiation of hDPSCs. The applicant's pre-experiment found that the expression of lncRNA-G018548 was up-regulated during the odontoblast differentiation of hDPSCs, and cell experiments confirmed that it promoted the odontoblast differentiation of hDPSCs. Bioinformatics prediction and RIP experiments confirmed that G018548 combined with PTBP1. RNA-seq screened out the target gene Smad4 which was differentially expressed, and the TGF-β pathway was significantly enriched. DEX-seq analysis showed that Smad4 had changed alternative splicing in hDPSCs overexpressing G018548 and PTBP1. On the basis of previous studies, this project will deeply explore the specific mechanism of regulating Smad4 alternative splicing after the combination of G018548 and protein PTBP1, and then promote the odontogenic differentiation of hDPSCs, and verify it with the in vivo model, providing new ideas for dentin regeneration and vital pulp preservation.
外显子和内含子组成了真核生物基因,不同位点的可变剪切增加了基因加工的复杂性,同时扩展了基因的编码能力。人类基因超过95%存在发生可变剪接的现象。基因组的大部分序列被转录为非编码RNA,他们在细胞内参与多种生物学过程。在非编码RNA物种中,lncRNA是noncoding RNA(ncRNA)最大的亚类。研究表明,lncRNA通过参与调控可变剪切介导细胞的分化过程。在干细胞分化的不同阶段,通过可变剪切产生不同的转录本,决定干细胞各个阶段的命运进程。牙髓干细胞是人体内一种丰富来源的和具有巨大分化潜能干细胞。课题组前期研究中筛选到具有促进hDPSCs成牙本质向分化功能的lncRNA G018548。然而,lncRNA G018548调控hDPSCs成牙本质向分化的机制尚未清楚。本研究进一步研究发现lncRNA G018548通过调控基因可变剪切机制发挥功能,进一步阐明lincRNA-ASAO的调控机制,为hDPSCs提供lincRNA-ASAO作为牙本质向分化的潜在靶点的理论基础。结果表明lncRNA G018548与ALPL pre-mRNA形成双链体将PTBP1靶向2号外显子上的ESS位点,激活PTBP1剪切功能,介导2号外显子跳跃,产生ALPL 2型剪切异构体,促进hDPSCs成牙本质向分化。
国内基金
海外基金