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APETALA2基因启动子区甲基化修饰对托桂型芍药花型形成的调控机制分析

批准号:
32102411
项目类别:
青年科学基金项目(C类)
资助金额:
30.0 万元
负责人:
吴彦庆
依托单位:
学科分类:
观赏园艺学
结题年份:
2024
批准年份:
2021
项目状态:
已结题
项目参与者:
吴彦庆

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结项摘要

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中文摘要
培育花型多样且具有较高观赏和商业价值的芍药新品种备受关注。然而,目前关于芍药花型形成相关的分子机制尚不清楚,遗传改良进展缓慢。申请人前期以花型独特雅致的托桂型芍药为研究对象,利用多组学测序结合功能验证等方法,已筛选鉴定出花型调控关键候选基因—APETALA2。本研究将锁定APETALA2启动子区甲基化修饰对托桂型芍药花型形成的调控作用,利用生物信息学结合实验手段,确定APETALA2核心启动子区;利用BSP-Miseq测序对其进行甲基化位点检测,筛选重要甲基化位点及转录调控因子,并利用ChIP和EMSA实验进行体外验证,同时,构建重要转录因子的过表达载体,从个体水平上验证转录调控元件对基因表达及芍药花瓣形态发育的影响。分析DNA甲基化修饰对基因表达及芍药花型形成的调控作用,从而阐明APETALA2基因表观遗传修饰对芍药花型调控的分子机制,为我国芍药花型分子育种的理论研究与育种实践提供参考。
英文摘要
The cultivation of Paeonia lactiflora with various flower types and high ornamental and commercial value has received much attention. However, the molecular mechanism of the forming of Paeonia lactiflora anemone petals remain unclear, so that genetic improvement has been slow. Based on the previous study that we selected Paeonia lactiflora with unique and elegant flower type as research object, and identified a key candidate gene regulating flower types-APETALA2. To further explored the regulation mechanism of APETALA2 promoter methylation on the forming of Paeonia lactiflora anemone petals, we identified the APETALA2 gene core promoter region by bioinformatics method combined with experimental verification, and detected methylation sites by BSP-Miseq sequencing. Through the analysis of the effect of methylation on gene expression, we screened out important methylation sites and transcription factors and further performed the validation experiment in vitro by ChIP and EMSA assays. Moreover, we conducted the overexpression of transcription factors, combining with the verification of genetic transformation system, we verified the effect of transcriptional regulatory elements on gene expression and flower types in Paeonia lactiflora. In this study, important methylation sites and transcriptional regulatory elements in APETALA2 core promoter region of Paeonia lactiflora were screened and verified. Thus, we systematically analyzed the effect of transcriptional regulatory elements on gene expression and flower types, in order to elucidate the molecular mechanism of DNA methylation modification regulating flower pattern in Paeonia lactiflora. Besides, this study provides theoretical reference for flower molecular breeding of Paeonia lactiflora in China.
芍药(Paeonia lactiflora Pall.)作为我国的传统名花,其花型优劣直接关系到它的观赏价值和商业价值,但目前芍药花瓣发育形成相关的分子机制尚不清楚,因此迫切需要揭示芍药花型调控的分子机制,为解决培育花型多样的芍药品种这一难题提供理论指导。本研究以芍药托桂型品种‘紫凤羽’内、外花瓣组织为材料,前期通过比较转录组学和蛋白质组学联合分析来筛选芍药花型调控的关键基因—APETALA2(AP2)。利用RACE方法克隆获得芍药PlAP2基因cDNA序列,其全长1935 bp。PlAP2 蛋白结构与功能预测表明,其为亲水性不稳定的非分泌蛋白,无跨膜结构和信号肽,具有2个相同的保守结构域AP2/(ethylene-responsive factors, ERF)(151213aa和243306aa),主要定位在细胞质(45.0%)中,少量分布于微体、线粒体基质间隙和溶酶体。芍药‘紫凤羽’品种PlAP2 基因在外瓣组织中表达水平显著高于内瓣,盛开期S3表达水平均显著高于花蕾期S1、初开期S2、衰败期S4,同时‘彤云金焰’表达量均显著高于‘红楼锦菊’和‘紫凤羽’品种。此外,本研究发现芍药‘紫凤羽’品种不同发育时期以及芍药不同品种(‘彤云金焰’、‘红楼锦菊’、‘紫凤羽’)间花瓣形态特征均存在明显差异,综合表明PlAP2 基因表达水平与芍药花瓣发育密切相关。芍药PlAP2 基因启动子CpG岛区域(665 bp ~ 872 bp)中存在7个CpG位点发生不同程度的甲基化,其中CpG-3位点与mRNA表达水平呈现极显著负相关,并且CpG-3位于Sp1转录因子结合位点上,表明甲基化修饰可能抑制了Sp1转录因子与启动子DNA结合,降低了PlAP2 基因表达水平,从而影响芍药花瓣发育形成。此外,建立了芍药叶片遗传转化体系平台,进一步鉴定与验证芍药花型调控的有效遗传标记。本项目基于前期研究基础上,进一步对关键候选基因-plAP2进行克隆、生物信息学分析、基因表达特性以及启动子区甲基化调控功能验证,为今后深入研究芍药AP2基因功能并开展芍药花型遗传改良的分子育种提供理论指导。
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