p63/YY1通过调控染色质结构激活SULF2介导肝癌的机制研究
批准号:
32100447
项目类别:
青年科学基金项目(C类)
资助金额:
30.0 万元
负责人:
喻昕阳
依托单位:
学科分类:
表观遗传调控
结题年份:
2024
批准年份:
2021
项目状态:
已结题
项目参与者:
喻昕阳
中文摘要
染色质结构异常与肿瘤发生密切相关,先锋转录因子能结合并打开封闭染色质。申请人前期证明p53为先锋转录因子,最近发现p63也具备该特性,且其多结合在增强子区域,上调增强子活性。文献及我们预实验均显示部分肝癌组织及细胞系中p63高表达。但“p63是否作为先锋转录因子参与肝癌发生及其机制”尚无报道。围绕这一关键科学问题,我们预实验显示:过表达p63促进肝癌细胞增殖,伴促癌基因SULF2上调;SULF2增强子及启动子区存在多个p63结合位点,过表达p63这些位点附近H3K4me3显著上调(激活);p63与增强子-启动子互作蛋白YY1存在相互作用,且二者结合位点相邻。由此,我们提出科学假设:p63作为先锋转录因子打开SULF2调控元件染色质结构,召集YY1形成启动子-增强子环,最终上调SULF2表达,促进肝癌发生。本项目拟采用ChIA-PET等方法验证该假设,有望阐明染色质结构重塑介导肝癌的新机制。
英文摘要
Aberrant chromatin structure plays a critical role in tumorigenesis. Pioneer transcription factors can bind to closed chromatin and induce chromatin opening. The applicant previously proved the pioneering capability of p53, and recently found that p63 also has pioneer factor characteristics, which usually binds to enhancer with increased activity. Previous publications and our pilot experiments showed that p63 is highly expressed in a few liver cancer tissues and cell lines. However, "whether p63 functions as pioneer transcription factor in liver tumorigenesis" has not been proved yet. In order to explore this issue, we performed preliminary experiments and found that overexpression of p63 promoted the liver cancer cells proliferation along with up-regulation of SULF2; besides, there were multiple p63 binding sites in the SULF2 enhancer and promoter regions, and p63 overexpression significantly up-regulated H3K4me3 (active histone mark) surrounding these sites; moreover, p63 interacts with YY1 protein which can establish enhancer-promoter interactions, and they also have adjacent binding sites. Therefore, we hypothesized that p63 functions as a pioneer transcription factor, which opens up the chromatin structure of SULF2 regulatory elements, and then recruits YY1 to establish a promoter-enhancer loop, and finally up-regulates SULF2 expression and promotes liver tumorigenesis. Techinques including ChIA-PET will be applied, we aims at providing new insights for the role of chromatin remodeling in liver tumorigenesis.
p63在细胞发育过程中发挥着关键作用,并与多种肿瘤密切相关,但其在肝癌中的具体作用机制尚不完全明确。本研究通过分析数据库中肝细胞肝癌的临床数据,揭示了p63在肝癌中的异常表达模式,并发现高水平p63与肝癌患者一种肿瘤亚型的较低生存率之间存在相关性。为进一步探究p63在肝癌中的作用机制,我们采用了Western blot(WB)和实时荧光定量PCR(qPCR)等实验技术,检测了p63在不同肝癌细胞系中的蛋白和RNA表达水平。通过构建p63高表达的肝癌细胞系模型,并结合细胞表型实验,我们发现上调p63表达能显著增强肝癌细胞的增殖和迁移能力。基于上述细胞模型,我们进行了转录组测序及深入分析,鉴定出一系列与细胞行为相关的差异表达基因,其中包括SULF2。功能富集分析揭示这些基因与细胞外基质构建、上皮间质转化等功能密切相关,并参与了多种与肿瘤发生发展相关的信号通路。为进一步解析p63如何影响基因调控网络,我们利用组蛋白ChIP-seq技术分析了p63对染色质结构与状态的影响,发现p63结合后能提高染色质的转录活性。此外,我们通过ChIP-seq实验捕获了p63在肝癌细胞中的实际结合位点,发现这些位点主要位于远离转录起始位点的区域。这些结果提示我们p63可能促进了染色质的远程互作。为进一步验证这一推测,我们深入分析了p63与染色质结构蛋白YY1和CTCF的相互作用关系,结果证实p63与YY1存在相互作用,并能促进CTCF在启动子近端的结合。综上所述,本研究不仅揭示了p63对肝癌发展的促进作用,还阐明了其在肝癌细胞中对肿瘤相关基因表达网络的调控机制,为深入理解肝癌的发病机制和开发新的治疗策略提供了重要依据。
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