Paracoccus kondratievae来源酶HylD1和HylD2水解邻苯二甲酸酯侧链酯键的分子识别机制
批准号:
32072165
项目类别:
面上项目
资助金额:
58.0 万元
负责人:
徐友强
依托单位:
学科分类:
食品生物化学
结题年份:
2024
批准年份:
2020
项目状态:
已结题
项目参与者:
徐友强
中文摘要
食品源邻苯二甲酸酯污染严重威胁人体健康,酶法水解其侧链酯键是降低毒性的有效方法之一。邻苯二甲酸酯酯键连接侧链结构多样,显著影响酶对底物的分子识别和酯键水解。由于食品常被多种邻苯二甲酸酯污染,以及酶的底物谱差异和分子识别机制匮乏,酶法水解的应用被极大限制。因此探究酶对邻苯二甲酸酯侧链酯键水解的分子识别机制十分必要。前期研究从自主知识产权的白酒来源微生物中获得分别具有短直链和长支链邻苯二甲酸酯水解能力的酶HylD1和HylD2。拟通过同源建模、分子对接和酶工程改造,对比分析影响酶底物谱差异的关键位点;利用理性设计和分子动力学计算,从催化关键节点和微观动态过程双角度对比原酶与突变酶底物分子识别的差别,解析关键位点影响酶对底物分子识别的催化过程的差异;对关键位点分别引入不同类型氨基酸突变,结合催化动力学和模拟计算分析,总结关键位点影响酶对底物分子识别的机制,为酶法有效水解邻苯二甲酸酯提供理论依据。
英文摘要
Phthalate esters pollution in food is a serious threat to human health. Enzymatic hydrolysis of the side-chain ester bond of phthalate esters is one of the effective methods to reduce the toxicity. The side-chain of phthalate ester linked by ester bond is varied in structure, and significantly affects the molecular recognition and hydrolysis of the substrate. As always polluted by kinds of phthalate esters, the specificity of enzyme and the lack of substrate recognition mechanism, the application of enzymatic hydrolysis is greatly limited. Therefore, it is quite necessary to explore the molecular recognition mechanism of the enzyme toward the hydrolysis of side-chain ester bond of phthalate esters. In our previous work, the enzymes HylD1 and HylD2 with respective hydrolysis capabilities toward short and straight side-chain, and long and branched side-chain ester bonds of phthalate esters were cloned from Baijiu microorganism with independent intellectual property rights. The key sites were compared affecting the divergence of substrate spectrum through homologous modeling, molecular docking and enzyme engineering. By rational design and molecular dynamic calculation, the differences of substrate recognition mechanisms between the original enzyme and the mutant ones were compared and summarized from the two perspectives of key catalytic nodes and micro-dynamic process. The divergence of the catalytic processes affected by the key sites of the enzymes for substrate molecular recognition were revealed. The key site was mutated by different types of amino acids to summarize the affections to the enzyme for substrate molecular recognition combined with catalytic kinetic and simulate computation analysis. This will provide theoretical basis for the efficient hydrolysis of phthalate esters by enzymes.
研究分别聚焦窄/宽底物谱邻苯二甲酸酯水解酶HylD1和HylD3,首先通过突变确定HylD1催化三联体为Ser140-Asp231-His261,HylD3催化三联体为Ser79-Lys82-Tyr185。实验通过分子对接和关键位点突变进行催化机制分析,发现HylD1的Tyr34、Phe41、Thr194和HylD3的Ala258、Leu253、Ala353、Ala276、Gly352均存在空间位阻作用。空间位阻作用根据氨基酸位置的不同存在一定差别,Phe41位于HylD1的盖子结构通道口处,Tyr34位于通道中,氨基酸R基的空间位阻作用影响底物进入催化活性腔体。催化活性腔体的氨基酸也存在空间位阻作用。HylD1的Thr194和HylD3的Ala276由于与底物苯环之间存在空间位阻作用,影响底物进入催化口袋进而影响酶活力。HylD3的Ala258和Leu253对PAEs侧链一个酯键产生空间位阻作用,影响Ser进行亲核攻击底物的另一个酯键;HylD3的Ala353和Gly352通过空间位阻作用直接影响Ser进行亲核攻击PAEs的酯键。HylD3的Leu156位于底物苯环的侧面,其所处位置并不会直接影响底物进入催化口袋,而突变为Ala后,除与底物疏水作用下降外,也会扩大催化腔体,可能导致底物偏移,影响Ser79的亲核攻击,进而影响酶活力。研究对比分析表明,HylD1存在由酶表面到催化活性中心的通道,通道口处氨基酸的空间位阻作用会影响底物进入活性腔体和产物的释放;而HylD3的催化活性中心并不深入酶分子内部,不存在较长的由酶表面到催化活性中心的通道,与HylD1相比氨基酸的空间位阻作用弱,这是HylD3相比HylD1具有更宽的底物谱且催化能力更强的原因。发表论文10篇,硕士毕业论文3篇,获得全国轻工行业先进工作者、中国食品科学技术学会杰出青年奖和中国轻工业联合会科技进步一等奖。
紫色红曲霉来源脂肪酶LIP05催化合成己酸乙酯的分子识别机制
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批准号:31801467
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项目类别:青年科学基金项目
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资助金额:25.0万元
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批准年份:2018
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负责人:徐友强
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依托单位:
国内基金
海外基金