Dead simple OWL design patterns
Dead simple OWL design patterns
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DOI：
10.1186/s13326-017-0126-0
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发表时间：
2017-06-05
影响因子：
1.9
通讯作者：
Mungall, Christopher
中科院分区：
文献类型：
--
作者：
Osumi-Sutherland, David;Courtot, Melanie;Mungall, Christopher
背景：生物本体论通常需要多个分类轴来支持其用户的需求。只有通过使用推理来通过一致的公理化模式自动分类，才能使此类本体的开发具有可伸缩性和可持续性。许多起源于OBO或OWL的生物本体论都遵循这种方法。这些模式需要以一种只需要最少的专业知识就能理解和编辑的形式记录下来，并且可以使用各种使用OWL本体的编程方法来验证和应用。结果：这里我们描述了一个满足这些需求的系统，Dead Simple OWL Design Patterns(DOS-DPS)，并以基因本体中的例子说明了该系统。结论：DOS-DPS被多个本体开发项目快速采用，说明了我们开发的简单设计模式系统的易用性和迫切需求。
Background: Bio-ontologies typically require multiple axes of classification to support the needs of their users. Development of such ontologies can only be made scalable and sustainable by the use of inference to automate classification via consistent patterns of axiomatization. Many bio-ontologies originating in OBO or OWL follow this approach. These patterns need to be documented in a form that requires minimal expertise to understand and edit and that can be validated and applied using any of the various programmatic approaches to working with OWL ontologies.Results: Here we describe a system, Dead Simple OWL Design Patterns (DOS-DPs), which fulfills these requirements, illustrating the system with examples from the Gene Ontology.Conclusions: The rapid adoption of DOS-DPs by multiple ontology development projects illustrates both the ease-of use and the pressing need for the simple design pattern system we have developed.