I2b2-etl: Python application for importing electronic health data into the informatics for integrating biology and the bedside platform.
I2b2-etl: Python application for importing electronic health data into the informatics for integrating biology and the bedside platform.
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DOI：
10.1093/bioinformatics/btac595
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发表时间：
2022-10-14
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影响因子：
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The i2b2 platform is used at major academic health institutions and research consortia for querying for electronic health data. However, a major obstacle for wider utilization of the platform is the complexity of data loading that entails a steep curve of learning the platform’s complex data schemas. To address this problem, we have developed the i2b2-etl package that simplifies the data loading process, which will facilitate wider deployment and utilization of the platform. We have implemented i2b2-etl as a Python application that imports ontology and patient data using simplified input file schemas and provides inbuilt record number de-identification and data validation. We describe a real-world deployment of i2b2-etl for a population-management initiative at MassGeneral Brigham. i2b2-etl is a free, open-source application implemented in Python available under the Mozilla 2 license. The application can be downloaded as compiled docker images. A live demo is available at https://i2b2clinical.org/demo-i2b2etl/ (username: demo, password: Etl@2021). Supplementary data are available at Bioinformatics online.
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影响因子：
15.2
作者：
Brat, Gabriel A.;Weber, Griffin M.;Kohane, Isaac S.
通讯作者：
Kohane, Isaac S.
影响因子：
2.7
作者：
Blood, Alexander J.;Fischer, Christina M.;Desai, Akshay S.
通讯作者：
Desai, Akshay S.
DOI：
10.1136/jamia.2009.000893
发表时间：
2010-03-01
影响因子：
6.4
作者：
Murphy, Shawn N.;Weber, Griffin;Kohane, Isaac
通讯作者：
Kohane, Isaac
影响因子：
3.7
作者：
Klann, Jeffrey G.;Joss, Matthew A. H.;Murphy, Shawn N.
通讯作者：
Murphy, Shawn N.
影响因子：
3.5
作者：
Wagholikar KB;Dessai P;Sanz J;Mendis ME;Bell DS;Murphy SN
通讯作者：
Murphy SN