Permanent draft genome sequence of sulfoquinovose-degrading Pseudomonas putida strain SQ1
Permanent draft genome sequence of sulfoquinovose-degrading Pseudomonas putida strain SQ1
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DOI：
10.1186/s40793-015-0033-x
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发表时间：
2015-07-22
影响因子：
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通讯作者：
Schleheck, David
中科院分区：
文献类型：
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作者：
Felux, Ann-Katrin;Franchini, Paolo;Schleheck, David
对恶臭假单胞菌（Pseudomonas putida SQ1）利用植物糖磺基喹啉糖（6-脱氧-6-磺基葡萄糖）生长的能力进行了分离，以确定其sq -降解途径及其所涉及的酶和基因。在这里，我们描述了生物体的特征，连同它的草图基因组序列和注释。该草图基因组全长5328888 bp，预计编码5824个蛋白编码基因；总G + C含量为61.58%。基因组注释被用于肽指纹-质谱法鉴定可能参与SQ降解的蛋白质。
Pseudomonas putida SQ1 was isolated for its ability to utilize the plant sugar sulfoquinovose (6-deoxy-6-sulfoglucose) for growth, in order to define its SQ-degradation pathway and the enzymes and genes involved. Here we describe the features of the organism, together with its draft genome sequence and annotation. The draft genome comprises 5,328,888 bp and is predicted to encode 5,824 protein-coding genes; the overall G + C content is 61.58 %. The genome annotation is being used for identification of proteins that might be involved in SQ degradation by peptide fingerprinting-mass spectrometry.