Tranche Distributed Repository and ProteomeCommons.org
Tranche Distributed Repository and ProteomeCommons.org
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DOI：
10.1007/978-1-60761-987-1_8
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发表时间：
2011-01-01
期刊：
影响因子：
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通讯作者：
Andrews, Philip C.
中科院分区：
文献类型：
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作者：
Smith, Bryan E.;Hill, James A.;Andrews, Philip C.
Tranche是一个分布式存储库，旨在为蛋白质组学社区冗余地存储和传播数据集。它为研究人员提供了几个重要功能，包括支持大型数据文件，出版前访问控制，许可选项，以及确保数据出处和完整性。Tranche与ProteomeCommons.org紧密集成，这是一个在线社区资源，为蛋白质组学研究人员提供了各种有用的工具，包括项目管理和数据注释。在本章中，我们将讨论Tranche和ProteomeCommons.org的发展，并特别关注为什么数据公开和不受限制是可取的，以及数据归档和开放访问所面临的挑战。然后，我们提供了Tranche和ProteomeCommons.org的技术概述，以及使用这些资源的分步说明，包括图形用户界面（GUI）、命令行工具和应用程序编程接口（API）。最后，我们简要讨论了当前和未来的发展努力和合作。
Tranche is a distributed repository designed to redundantly store and disseminate data sets for the proteomics community. It has several important features for researchers, including support for large data files, prepublication access controls, licensing options, and ensuring both data provenance and integrity. Tranche tightly integrates with ProteomeCommons.org, an online community resource that offers a variety of useful tools for proteomics researchers, including project management and data annotation. In this chapter, we discuss the development of Tranche and ProteomeCommons.org, paying particular attention to why it is desirable that data be publicly available and unrestricted as well as the challenges facing data archiving and open access. We then provide a technical overview of Tranche and ProteomeCommons.org as well as step-by-step instructions for using these resources, including the graphical user interface (GUI), command-line tools, and Application Programmer Interface (API). We end with a brief discussion of current and future development efforts and collaborations.