A VECTOR REPRESENTATION FOR AMINO-ACID-SEQUENCES

A VECTOR REPRESENTATION FOR AMINO-ACID-SEQUENCES
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DOI:
10.1016/s0092-8240(84)80063-4
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发表时间:
1984-01-01
影响因子:
3.5
通讯作者:
SWANSON, R
SWANSON, R
中科院分区:
数学4区
文献类型:
--
作者:
SWANSON, R

文献摘要

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一个计划表示氨基酸作为向量在平面上提出和证明。平面的两个维度是尺寸和疏水性。然后应用该载体表示来生成一些同源蛋白质组的共有序列。一组序列的同源性程度的品质因数由分析产生。还考虑了该方案的其他一些应用。
A scheme for representing amino acids as vectors in the plane is presented and justified. The 2 dimensions of the plane are size and hydrophobicity. The vector representation is then applied to generate a consensus sequence for some sets of homologous proteins. A figure of merit for the degree of homology of a set of sequences results from the analysis. Some other applications of the scheme are also considered.