PyCogent: a toolkit for making sense from sequence.
PyCogent: a toolkit for making sense from sequence.
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DOI：
10.1186/gb-2007-8-8-r171
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发表时间：
2007
期刊：
影响因子：
12.3
通讯作者：
Huttley GA
中科院分区：
文献类型：
--
作者：
Knight R;Maxwell P;Birmingham A;Carnes J;Caporaso JG;Easton BC;Eaton M;Hamady M;Lindsay H;Liu Z;Lozupone C;McDonald D;Robeson M;Sammut R;Smit S;Wakefield MJ;Widmann J;Wikman S;Wilson S;Ying H;Huttley GA
比较基因组工具包是一个用于生物序列概率分析、设计工作流程以及生成可用于发表的高质量图形的框架，它是用Python实现的。
我们用Python实现了比较基因组工具包，这是一个全面集成且经过充分测试的框架，可用于生物序列的新型概率分析、设计工作流程以及生成可用于发表的高质量图形。PyCogent包含与远程数据库的连接接口、用于处理生物序列的内置通用概率技术以及第三方应用程序的控制器。该工具包利用了并行架构，可在多种硬件和操作系统上运行，并且依据通用公共许可证可供使用。
The COmparative GENomic Toolkit, a framework for probabilistic analyses of biological sequences, devising workflows and generating publication quality graphics, has been implemented in Python. We have implemented in Python the COmparative GENomic Toolkit, a fully integrated and thoroughly tested framework for novel probabilistic analyses of biological sequences, devising workflows, and generating publication quality graphics. PyCogent includes connectors to remote databases, built-in generalized probabilistic techniques for working with biological sequences, and controllers for third-party applications. The toolkit takes advantage of parallel architectures and runs on a range of hardware and operating systems, and is available under the general public license from .