Genetic and Epigenetic Landscape of Endothelial Cells Differentiation Reveal the Transcriptional Factors Network.
Genetic and Epigenetic Landscape of Endothelial Cells Differentiation Reveal the Transcriptional Factors Network.
批准号:
24710227
负责人:
KANKI Yasuharu
金额:
$2.75万
依托单位:
依托单位国家:
日本
项目类别:
Grant-in-Aid for Young Scientists (B)
财政年份:
2012
资助国家:
日本
项目状态:
已结题
起止时间:
2012-04-01 至 2014-03-31
中文摘要
在本报告中,我们的目标是从胚胎干细胞(ES)或诱导多能干细胞(IPS)建立更有效和更实用的内皮细胞分化系统。为此,我们利用芯片和微阵列两种综合分析方法对小鼠ES细胞的内皮细胞分化系统进行了分析,发现H3K4me3在分化的早期阶段发生了变化。此外,我们还发现了一些双价基因(H3K4me3和H3K27me3双阳性),如ETV2、Gata2、Sox18、Sox7和Fl1,这些基因在早期上调,被认为是内皮细胞分化的主要调控基因。这些因素的敲除导致内皮细胞分化效率的急剧下降。综上所述,这些发现表明,决定细胞命运的不仅是主要的转录因子,还包括表观遗传的组蛋白修饰。
英文摘要
In this report, our aim is to establish the more efficient and practical endothelial cell differentiation system from embryonic stem (ES) or induced pluripotent stem (iPS) cells. On this purpose, we analyzed the endothelial cell differentiation system from mouse ES cells by using two comprehensive analyses ChIP-seqs and micorarrays.From these experiments we found out H3K4me3 have changed on early stage during differentiation. Moreover, we discovered some bivalent genes (H3K4me3 and H3K27me3 double positive) such as Etv2, Gata2, Sox18, Sox7 and Fli1 which are upregulated at early time points and supposed to be candidates for master regulators of endothelial cells differentiation. Knockdown of these factors caused drastic reduction of endothelial cell differentiation efficiency.Taken together, these findings have suggested that determination of cell fate is based on not only master transcription factors but also epigenetic histone modifications.
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染色体立体構造網羅解析からの細胞特異性解読へのアプローチ
综合分析染色体三维结构破译细胞特异性的方法
DOI:
--
发表时间:
2014
期刊:
影响因子:
--
作者:
[Yae T, Tsuchihashi K, Ishimoto T, Motohara T, Yoshikawa M, Yoshida GJ, Wada T, Masuko T,Mogushi K, Tanaka H, Osawa T, Kanki Y, et al, 神吉康晴]
通讯作者:
神吉康晴
ChIP-sequence Reveals Functional Interleukin-4-Inducible STAT6 Binding to the Vascular Cell Adhesion Molecule 1 Promoter
ChIP 序列揭示了功能性 IL-4 诱导型 STAT6 与血管细胞粘附分子 1 启动子的结合
DOI:
--
发表时间:
2012
期刊:
影响因子:
--
作者:
[Yasuharu Kanki, Takahide Kohro, Shuichi Tsutsumi, Imari Mimura, Takao Hamakubo, Takashi Minami, Youichiro Wada, Hiroyuki Aburatani, Tatsuhiko Kodama, Yasuharu KANKI]
通讯作者:
Yasuharu KANKI
Molecular mechanism about sustained VCAM-1 induction by the transcriptome and epigenomic analyses
通过转录组和表观基因组分析持续诱导 VCAM-1 的分子机制
DOI:
--
发表时间:
2012
期刊:
影响因子:
--
作者:
[Yasuharu Kanki, Taichi Matsunaga, Youichiro Wada, Jun Yamashita, Takashi Minami, 神吉 康晴, Yasuharu Kanki]
通讯作者:
Yasuharu Kanki
Epigenetically coordinated GATA2 bindings are necessary for the endothelial cell specificity
表观遗传协调的 GATA2 结合对于内皮细胞特异性是必要的
DOI:
--
发表时间:
2012
期刊:
影响因子:
--
作者:
[Yasuharu Kanki, Takahide Kohro, Shuichi Tsutsumi, Imari Mimura, Takao Hamakubo, Takashi Minami, Youichiro Wada, Hiroyuki Aburatani, Tatsuhiko Kodama]
通讯作者:
Tatsuhiko Kodama
DOI:
10.1111/gtc.12086
发表时间:
2013-11-01
期刊:
GENES TO CELLS
影响因子:
2.1
作者:
[Suzuki, Mikiko, Kobayashi-Osaki, Maki, Yamamoto, Masayuki]
通讯作者:
Yamamoto, Masayuki
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