RESOURCE FOR BIOMEDICAL COMPUTING

此修订提案要求为BRTP Biomedical提供为期4年的支持 强调定量生物医学成像的计算资源。 目标是1)开发对健康重要的新计算技术- 相关研究，2)与生物医学科学家合作解决 需要高级计算技术的问题，3)制造资源 调查人员可获得的能力，4)培训科学家 生物医学计算，以及5)开发和应用有用的生物医学-- 本地和全国的计算机系统。 技术研发跨越理论发展和实施 和系统的输出。理论发展包括建模 生物现象和用于数据采集的转导。这个 计算方法的发展包括1)建模和 从测量中提取图像信息的算法开发 数据，2)高性能处理器的应用，以及3) 开发能够快速运输和 集成到我们的协作者和更广泛的环境中 科学界。核心研究的具体领域包括1) 改进的正电子发射层析成像算法 衰减校正，将来自其他来源的信息应用于图像 估计，并将现有方法扩展到三维数据，2) 一种改善扫描性能和性能的建模和图像估计方法 计算光学切片显微镜和3)新的研究方法 全局形状建模和图像表示以适应多个 多维生物医学图像的可变性水平。 技术发展包括1)SIMD和MIMD的开发 实现有用性能的并行处理方法 具有计算挑战性的算法，以及2)高速通信 用于向分散的站点分发资源功能的系统 包括技术和生物医学研究。一体化的环境 对于定量成像，研究是保持的。 合作研究包括9个校内研究(华盛顿大学)和 9个校外项目：功能脑图，认知 神经科学、心肌和肿瘤成像、图像统计方法 分析，核磁共振脑血流，多细胞形态发生， 胚胎肌动蛋白结合蛋白，突触后受体可塑性，高... 分辨率荧光显微镜，抗HIV寡核苷酸，图案- 理论方法、可变形拓扑模板、放射治疗 规划、眼底成像、基于ATM的联网、基因连锁 分析，心肌缺血的细胞生物化学，散射校正 用于PET、DNA测绘和电子显微镜放射自显影分析。 四大资源技术为10校内和5校用户提供服务 校外研究项目。

This revised proposal requests 4-year support for a BRTP Biomedical Computing Resource that emphasizes quantitative biomedical imaging. Goals are to 1) develop new computing technologies important to health- related research, 2) collaborate with biomedical scientists to solve problems requiring advanced computing techniques, 3) make Resource capabilities accessible to investigators, 4) train scientists in biomedical computing, and 5) develop and field useful biomedical- computing systems, locally and nationally. Technological R&D spans theoretical developments through implementation and exportation of systems. Theoretical developments include modeling of biological phenomena and of transduction for data acquisition. The development of computing methodologies includes 1) modeling plus algorithm development for abstracting image information from measurement data, 2) the application of high-performance processors, and 3) the development of systems that can be expeditiously transported and integrated into the environments of our collaborators and the broader scientific community. Specific areas of core research include 1) algorithms for advancing positron-emission tomography by improving attenuation corrections, applying information from other sources to image estimations, and extending current methods to 3-dimensional data, 2) modeling and image-estimation methods for improving both scanning and computational optical-sectioning microscopy, and 3) new approaches to global shape modeling and image representation to accommodate multiple levels of variability in multi-dimensional biomedical images. Technological development includes 1) exploitation of both SIMD and MIMD parallel-processing methods for achieving useful performance of computationally challenging algorithms, and 2) high-speed communication systems for distributing Resource capabilities to dispersed sites for both technological and biomedical research. An integrated environment for quantitative-imaging research is maintained. Collaborative research includes 9 intramural (Washington University) and 9 extramural projects in: functional brain mapping, cognitive neuroscience, myocardial and tumor imaging, statistical methods in image analysis, cerebral blood flow via MRI, multicellular morphogenesis, embryonic actin-binding proteins, postsynaptic-receptor plasticity, high- resolution fluorescence microscopy, anti-HIV oligonucleotides, pattern- theoretic methods, deformable topologic templates, radiation-treatment planning, ocular-fundus imaging, ATM-based networking, genetic-linkage analysis, cellular biochemistry in cardiac ischemia, scatter corrections for PET, DNA mapping, and electron-microscopic autoradiograph analysis. Four Resource technologies provide user service for 10 intramural and 5 extramural research projects.