FUNCTIONAL CLONING OF DNA AND RNA BINDING PROTEINS

在我们目前对人类肿瘤发生的理解中，一个新兴的主题是癌症是随着突变和表观遗传改变在单个细胞中积累而出现的。 这种变化的最终结果是改变基因组的表达谱。 了解其表达在特定类型的癌症中改变的基因的身份和功能，将使特定基因和途径与独特的癌症诱导表型相关。 这些信息将有助于我们理解癌症生物学，并为癌症检测提供新的生物标志物，以及为治疗策略提供新的基因靶点。 因此，当前癌症研究的一个高度优先事项是揭示区分癌细胞与野生型的分子变异，并确定受影响基因的功能。 在其改变的表达可以标记癌症的分子特征的可能基因中，主要候选者包括编码用于调节基因组的表达并催化其复制和修复的蛋白质的那些基因，统称为核酸结合蛋白（NBP）。维持基因组的完整性和调节其适当的表达是必须控制的重要的第一层细胞内过程。 由于基因组的改变可能导致癌症等遗传疾病，最终改变了在核酸管家和调节功能中发挥作用的基因的表达谱，因此我们在本提案的R21阶段的第一个目标是研究开发功能基因组学技术的可行性，该技术旨在通过编码与DNA和/或RNA结合的蛋白质的能力来识别人类基因。 该技术的几个额外组件将在该提案的R33扩展开发阶段中得到解决。 一个包括一种新的分选阶段，其将根据NBP对特定核酸类型和构象的（编码的）结合特性快速区分不同类别的NBP。我们还将开发可用于虚拟和基于微阵列的表达谱分析的生物信息学工具，以采样所选基因或基因簇的表达是否在正常与特定癌细胞中发生改变。 一旦开发出来，这项新技术将能够对维持和调节基因组的基因进行功能鉴定、分类和表达谱分析。 它将直接提高癌症基因组解剖学项目（CGAP）的数据质量，并可能在细胞内的相对表达发生变化时识别出赋予癌症易感性的新基因。 这种技术目前还不存在。

An emerging theme in our current understanding of human oncogenesis is that cancers arise as mutations and epigenetic alterations accumulate in individual cells. The ultimate consequence of such changes is to alter the expression profile of the genome. Knowledge of the identity and function of genes whose expression is altered in particular types of cancer, would enable the correlation of specific genes and pathways to unique cancer induced phenotypes. This information would help our understanding of cancer biology and would provide new biomarkers for cancer detection as well as novel gene targets for therapeutic strategies. Thus, a high priority of current cancer research is to reveal the molecular variations that distinguish cancer cells from wild type and to determine the function of the affected genes. Of the possible genes whose altered expression may mark the molecular signature of cancer, primary candidates include those that encode proteins that function to regulate the expression of the genome and catalyze its replication and repair, collectively referred to as nucleic acid binding proteins (NBPs). Maintaining the integrity of the genome and regulating its appropriate expression are important first tier intracellular processes that must be controlled. Since genetic diseases such as cancer can result from alterations in the genome which ultimately change the expression profile of genes that function in nucleic acid house keeping and regulatory functions, our first goal, in the R21 phase of this proposal, is to examine the feasibility of developing a functional genomics technology aimed at identifying human genes selected by their ability to encode proteins that bind to DNA and/or RNA. Several additional components of the technology will be addressed in the R33 expanded development phase of the proposal. One encompasses a novel sorting phase that will rapidly distinguish between different classes of NBPs according to their (encoded) binding properties for particular nucleic acids types and conformations. We will also develop bioinformatic tools that can be used in both virtual and microarray based expression profiling to sample whether the expression of selected genes or gene clusters is altered in normal versus specific cancer cells. When developed, this new technology will enable the functional identification, categorization and expression profiling of genes that act to maintain and regulate the genome. It will directly improve the quality of data in the Cancer Genome Anatomy Project (CGAP) and it will likely identify new genes that confer a predisposition for cancer when their relative expression within a cell is altered. Such technology does not presently exist.