RNAi as an Intercellular Antiviral Defense Mechanism

描述（由申请人提供）：RNA干扰（RNAi）是介导RNA序列特异性降解的双链RNA（dsRNA）引导机制。RNA干扰可用于抑制病毒复制的最新研究成果已成为一个激动人心的研究领域。首先，它提供了一种新的抗病毒治疗方法，其次，它可能构成一种迄今未被认识到的天然抗病毒防御机制。该提案的长期目标是更好地了解RNA干扰（RNAi）在抑制病毒感染中的意义和治疗潜力。为此，我们提出了三个具体目标：（1）了解基于siRNA的病毒抑制的决定因素;（2）研究RNAi作为一种天然的抗病毒防御机制;（3）识别和表征RNAi机制的新组分。我们将采用充分表征的正链RNA病毒（小核糖核酸病毒、甲病毒和黄病毒）作为模型病毒，并采用果蝇和哺乳动物细胞作为模型宿主。(1)为了了解基于siRNA的病毒抑制的决定因素，我们将定义对RNAi敏感的RNA病毒的基因组区域，并探索不同siRNA设计方法的效率。我们还将研究病毒逃避RNAi的能力。(2)为了研究RNAi作为一种天然的抗病毒防御机制，我们研究了动物细胞的病毒感染是否产生siRNA，并分析了RNAi机制的抑制成分是否增强了哺乳动物细胞中的病毒复制。我们还将确定病毒感染是否诱导RNAi机制的变化。(3)为了鉴定和表征RNAi机制的新组分，我们在果蝇细胞中进行全基因组筛选。然后，我们将采用细胞生物学和生物化学来表征在我们的筛选中鉴定的基因的进入机制和作用，并分离在我们的筛选中鉴定的RNAi进入组分的哺乳动物直系同源物，并探索它们在哺乳动物系统中RNAi进入中的作用。

DESCRIPTION (provided by applicant): RNA interference (RNAi) is a double-stranded RNA (dsRNA) guided mechanism that mediates sequence specific degradation of RNA. The recent demonstration that RNA interference can be used to inhibit virus replication has initiated an exciting field of research. First, it provides a novel antiviral therapeutic approach and, second, it may constitute a hitherto unrecognized natural antiviral defense mechanism. The long-term goal of this proposal is to gain a better understanding of the significance and therapeutic potential of RNA interference (RNAi) in the inhibition of viral infections. To this end we propose three specific aims to: (1) understand the determinants of siRNA-based viral inhibition; (2) investigate RNAi as a natural antiviral defense mechanism; and (3) identify and characterize novel components of the RNAi machinery. We will employ well-characterized positive stranded RNA viruses (picornaviruses, alphaviruses, and flaviviruses) as model viruses, and employ Drosophila and mammalian cells as model hosts. (1) To understand the determinants of siRNA-based viral inhibition, we will define the genome regions of RNA viruses that are susceptible to RNAi, and explore the efficiency of different siRNA design approaches. We will also investigate the ability of viruses to escape RNAi. (2) To investigate RNAi as a natural antiviral defense mechanism, we examine whether viral infection of animal cells produces siRNAs and analyze whether inhibiting components of the RNAi machinery enhances viral replication in mammalian cells. We will also determine whether viral infection induces changes in the RNAi machinery. (3) To identify and characterize novel components of the RNAi machinery, we carry out genome-wide screens in Drosophila cells. We will then employ cell biology and biochemistry to characterize the mechanism of entry and the role of the genes identified in our screens, and isolate the mammalian orthologs of RNAi entry components identified in our screens and explore their role in RNAi entry in mammalian systems.