Integration of RNAi, proteomic and chemical genetic approaches to identify specif

描述（由申请人提供）：Wnt/无翅（wg）通路是一组进化上保守的信号通路的核心之一，调节后生动物发育的许多方面。Wnt通路的失调可能是有害的，因为几种组分的突变与肝脏、结肠、乳腺和皮肤的肿瘤发生有关。因此，开发和实施新技术以产生可用于调节Wnt/wg信号通路活性的分子工具至关重要。Wnt途径最重要的效应子之一是由转录因子？连环蛋白（？-猫）/犰狳（手臂）。由于连环蛋白应答转录（CRT）与许多癌症的发生有关，因此它成为开发可调节？最近，我们采用了一种新的方法，将“致敏”化学遗传高通量筛选（HTS）与RNA干扰（RNAi）筛选技术相结合，以鉴定果蝇细胞中Wnt通路的特异性小分子抑制剂。目的/假设：我们假设，我们的主要化学遗传筛选将确定小分子抑制剂，专门针对活性的稳定池？-在这个提议中，我们概述了研究候选小分子影响稳定的？cat并确定其蛋白质靶点。此外，由于小分子的靶点识别传统上很困难，我们还建议识别？-的全面蛋白质“相互作用组”网络cat使用质谱。最后，我们建议，比较表型分析的dsRNA介导的敲低已知的和新发现的？猫相互作用蛋白与候选小分子的相互作用将为我们提供一种新的方法，用于靶向鉴定在化学遗传筛选中分离的抑制剂。具体目标：1）研究初级筛选中鉴定的小分子影响培养细胞中CRT和Wnt响应表型的分子机制。2)确定新的蛋白质相互作用伙伴？-可能调节？的活性/稳定性的猫/臂- cat.3）对候选小分子和dsRNA介导的？-猫相互作用的蛋白质，并评估候选的小分子是否改变？cat与其已知的和新鉴定的同源蛋白质伴侣。研究设计：对于化学遗传筛选，我们将使用dsRNA介导的负调节因子Axin的敲低激活Wnt途径，这导致？这些“活化的”细胞将用大的小分子库处理，以测试是否有任何单独的化合物可以抑制？cat介导的转录激活（CRT），如通过Wnt响应性荧光素酶报告基因（dTF 12）的活性所判断的。候选的小分子将被测试它们改变？使用FRET和免疫共沉淀测定，检测猫与其已知蛋白质伴侣如Tcf、Bcl 9/legless（lgs）、pygopus（pygo）、APC和Axin的相互作用。我们还将使用已知的通路调节剂的RNAi结合候选小分子进行上位性分析（在细胞中）。这将使我们能够确定候选小分子影响Wnt途径的位点/阶段。此外，我们将确定新的蛋白质相互作用的合作伙伴？-猫使用TAP标签（串联亲和纯化）技术，目的是寻找可能调节？？-此外，我们将测试候选小分子是否可以消除？cat和TAP筛选中鉴定的新型相互作用蛋白。最后，我们将采用比较表型分析来测试从小分子或dsRNA介导的？敲低获得的表型之间的相似性。猫蛋白伴侣我们将采用基于细胞的和体内报告基因测定、免疫细胞化学和基于形态学的测定来进行表型分析。Wnt/wingless（wg）信号通路是一条进化上保守的信号通路，参与细胞生物学和动物发育的多个方面的调控。Wnt通路的失调也与多种人类疾病有关，包括肝癌、结肠癌、乳腺癌和皮肤癌。该项目的主要目标是开发和实施新技术，以产生可用于调节Wnt信号通路活性的分子工具。

DESCRIPTION (provided by applicant): The Wnt/wingless (wg) pathway is one of a core set of evolutionarily conserved signaling pathways that regulates many aspects of metazoan development. Misregulation of the Wnt pathway can be detrimental since mutations in several components are associated with tumorigenesis of the liver, colon, breast and skin. It is therefore crucial to develop and implement new technologies in order to generate molecular tools that may be used to modulate the activity of the Wnt/wg signaling pathway. One of the most important effectors of the Wnt pathway is encoded by the transcription factor, ?-catenin (?-cat)/armadillo (arm). Since Catenin Responsive Transcription (CRT) has been implicated in the genesis of many cancers, it makes a good target for developing therapeutics that could modulate the nuclear activity of ?-cat. Recently, we employed a novel methodology of integrating a "sensitized" chemical genetic high-throughput screen (HTS) with RNA-interference (RNAi) screening technology in order to identify specific small molecule inhibitors of the Wnt pathway in Drosophila cells. Objective/hypothesis: We hypothesize that our primary chemical genetic screen will identify small molecule inhibitors that specifically target the activity of the stabilized pool of ?-cat. In this proposal, we outline experiments to investigate the molecular mechanism(s) by which the candidate small molecules impact the activity of stabilized ?-cat and also identify their protein targets. Moreover, since target identification of small molecules has been traditionally difficult, we also propose to identify the comprehensive protein "interactome" network of ?-cat using mass-spectrometry. Finally, we propose that comparative phenotypic analysis of dsRNA-mediated knockdown of the known and newly identified ?-cat-interacting proteins with that of the candidate small molecules will provide us with a novel method for target identification of the inhibitors isolated in the chemical genetic screen. Specific aims: 1) Investigate the molecular mechanisms by which the small molecules identified in the primary screen impact CRT and Wnt-responsive phenotypes in cultured cells. 2) Identify novel protein interaction partners of ?-cat/arm that may regulate the activity/stability of ?-cat. 3) Perform comparative phenotypic analysis of candidate small molecules and dsRNA-mediated knockdown of ?-cat-interacting proteins and assess whether the candidate small molecules alter the binding of the ?-cat to its known and newly identified cognate protein partners. Study design: For the chemical genetic screen, we will activate the Wnt pathway using the dsRNA-mediated knockdown of the negative regulator, Axin which results in the stabilization and activation of the cytosolic pool of ?-cat. These "activated" cells will be treated with large small molecule libraries to test if any of the individual compounds could inhibit ?-cat mediated activation of transcription (CRT) as judged by activity of the Wnt- responsive luciferase reporter gene (dTF12). The candidate small molecules will be tested for their ability to alter ?-cat's interaction with its known protein partners, such as Tcf, Bcl9/legless (lgs), pygopus (pygo), APC and Axin using FRET and co-immunoprecipitation assays. We will also perform epistasis analysis (in cells) using RNAi of known regulators of the pathway in conjunction with candidate small molecules. This will enable us to determine the site/stage at which the candidate small molecules affect the Wnt pathway. Additionally, we will identify novel protein interaction partners of ?-cat using the TAP-tag (Tandem Affinity Purification) technology with the purpose of finding additional partner proteins that might regulate the activity of the stabilized pool of??-cat. Moreover, we will test if the candidate small molecules could abrogate the interaction between ?-cat and the novel interacting proteins identified in the TAP screen. Finally, we will employ comparative phenotypic analysis to test for similarities between phenotypes obtained from small molecules or dsRNA-mediated knockdown of??-cat protein partners. We will employ cell-based and in vivo reporter assays, immuno- cytochemical and morphology-based assays in order to conduct the phenotypic analysis. Project narrative The Wnt/wingless (wg) signaling pathway is an evolutionarily conserved pathway, which is involved in the regulation of many aspects of cell biology and animal development. Misregulation of the Wnt pathway has also been implicated in a variety of human diseases including cancer of the liver, colon, breast and the skin. The primary goal of this project is to develop and implement new technologies in order to generate molecular tools that may be used to modulate the activity of the Wnt signaling pathway.