Enhanced Dynamic Range Proteomic Analysis: Phase II

描述（由申请人提供）：这项工作的长期目标是开发一种光学模块，该光学模块将减少成像系统内的杂散光，从而从数字图像提供更准确的测量，并增加检测的动态范围，以能够分析当前不可测量的对象。目前的第二阶段建议的目的是大大提高荧光染料在蛋白质组学中的光谱成像分析，以检测蛋白质水平的变化和蛋白质翻译后修饰的凝胶电泳。该光学模块未来的潜在应用将改善免疫组织化学中的荧光检测、细胞和组织中荧光蛋白的分析、微孔板阅读和微流体分析，以用于多重诊断的新方法。该系统将可用于几乎所有的光学成像系统，从而扩大应用范围，并最终降低成本。具体目标是：（1）开发和表征降噪模块（NoRM）。该系统将记录初始图像，然后利用反馈回路来“关闭”亮像素和相关杂散光，以更准确地测量图像内的区域;（2）展示NoRM在蛋白质组学中的应用，这将验证该技术，并且能够在二维凝胶中检测蛋白质和蛋白质的模式，这些蛋白质目前太弱而无法观察（预期增强的蛋白质模式具有诊断价值），并指导增强的电洗脱/微流体消化/集成质谱分析;以及（3）制备生产原型NoRM，用于在第II阶段工作结束时进行有限规模的释放。此第二阶段工作建立在成功的第一阶段工作的基础上，与目前使用的图像包围技术相比，第一阶段工作在动态范围方面的改进超过了10倍。拟议的工作是跨学科的，需要在光学和机械设计，软件开发，生产工程，生物化学，蛋白质组学和系统生物学的专业知识。由此产生的技术将有助于蛋白质组学，显微镜和许多其他利用数码相机的技术。 公共卫生相关性：该技术将减少数字成像系统的杂散光噪声，从而扩展蛋白质组学、糖组学、细胞生物学、诊断学和任何使用数码相机的生物医学应用的能力。在这项工作中，弱表达蛋白质的模式和这些蛋白质的变化，其信号目前太弱，无法在电泳凝胶中识别，将被测量和识别，以更好地了解生物学机制，改善更特异性药物的开发，并增强再生和预防医学。

DESCRIPTION (provided by applicant): The long-term goal of this effort is to develop an optical module that will reduce stray light within imaging systems, thereby providing more accurate measurements from digital images and increased dynamic range of detection to enable analysis of objects not currently measurable. The present Phase II proposal is aimed at greatly enhancing the analysis of multicolor spectral imaging of fluorescent dyes in proteomics to detect changes in protein levels and protein posttranslational modifications in gel electrophoresis. Potential future applications of the optical module will improve multicolor fluorescence detection in immunohistochemistry and analysis of fluorescent proteins in cells and tissues, microplate reading and microfluidic analysis for new methods of multiplex diagnostics. The system to be developed will be usable on nearly all optical imaging systems so as to broaden the scope of applications and ultimately reduce the cost. The specific aims are to: (1) Develop and characterize a Noise Reduction Module (NoRM). This system will record an initial image, then utilize a feedback loop to "turn off" the bright pixels and associated stray-light to more accurately measure regions within an image; (2) Demonstrate the NoRM in proteomics applications, which will validate the technology, and enable detection of proteins and patterns of proteins in 2-D gels that are currently too weak to observe (the enhanced protein patterns are expected to have diagnostic value), and guide enhanced electroelution/microfluidic digestion/integrated mass spectral analysis ; and (3) Prepare a production prototype NoRM for a limited scale release by the end of the Phase II effort. This Phase II effort builds on a successful Phase I effort that demonstrated greater than factor of 10 improvement in dynamic range as compared to currently used image bracketing technology. The proposed effort is cross-disciplinary, with expertise required in optical and mechanical design, software development, production engineering, biochemistry, proteomics, and systems biology. The resulting technology will be useful for proteomics, microscopy, and many other technologies that utilize digital cameras. PUBLIC HEALTH RELEVANCE: The proposed technology will reduce the stray light noise for digital imaging systems, thereby expanding capabilities for proteomics, glycomics, cell biology, diagnostics and any biomedical application that utilizes digital cameras. During this effort, patterns of weakly-expressed proteins and changes in these proteins, whose signals are currently too weak to be identified in electrophoresis gels will be measured and identified to better understand biological mechanisms, improve development of more specific drugs, and enhance regenerative and preventative medicine.