Investigating the mechanism of proton translocation in solution: from small chemical systems to biomolecules

在这项建议中概述的主要研究主题是质子转移反应在水溶液中使用计算方法的机制的调查。这些过程在许多化学和生物化学转化中起着重要作用，包括酸碱反应、酶催化、底物结合和能量传递。质子转移反应在散装水，在水和疏水介质之间的界面，以及在生物相关的系统的理论研究已经积极追求了至少二十年。然而，随着超快，时间分辨振动光谱技术的出现，上述质子转移过程可以第一次直接探测相关的空间和时间分辨率。这为计算化学提供了新的机会，有助于推进我们对质子转移反应的基本理解。本研究计划的一个关键目标是改进现有的计算方法库，以补充上述光谱技术。在这种情况下，将提出一种新的方法，它使我们能够执行第一原理分子动力学计算，可以与最近报道的一系列国家的最先进的，飞秒分辨紫外泵/中红外探针酸碱中和实验。这些理论研究的一个重要目标是建立包括水中酸碱中和的基本步骤，但由此获得的信息也将与表面和界面的过程有关。 ** 质子易位在三维氢键网络的散装水的调查将补充核量子效应的研究。后一个项目将涉及调整和发展现有的计算方法，使人们能够计算和解释第一原理的热力学和动力学同位素效应。

The major theme of research outlined in this proposal is the investigation of the mechanism of proton transfer reactions in aqueous solutions using computational approaches. These processes play a fundamental role in numerous chemical and biochemical transformations, including acid-base reactions, enzyme catalysis, substrate binding and energy transduction. Theoretical investigations of proton transfer reactions in bulk water, at the interface between aqueous and hydrophobic media, as well as in biologically-relevant systems have been actively pursued for at least two decades. However, with the recent advent of ultrafast, time-resolved vibration spectroscopy techniques, the aforementioned proton transfer processes can for the first time be directly probed with the relevant space and time resolution. This opens new opportunities for computational chemistry to contribute to the advancement of our fundamental understanding of proton transfer reactions.******A key objective of the present research program is to improve the existing arsenal of computational methods that can complement the aforementioned spectroscopy techniques. In this vein a novel methodology will be presented, which allows us to perform first-principles molecular dynamics calculations that can be related to a recently reported series of state-of-the-art, femtosecond-resolved UV pump/mid-IR probe acid-base neutralization experiments. An important goal of these theoretical studies will be to establish the elementary steps comprising acid-base neutralization in water, but the information thus obtained will also be relevant to processes at surfaces and interfaces. ******The investigation of proton translocation in the 3D H-bond network of bulk water will be complemented by a study of nuclear quantum effects. The latter project will involve adapting and developing existing computational methodologies that allow one to compute and interpret first-principles thermodynamic and kinetic isotope effects.