PubNet: a flexible system for visualizing literature derived networks.

PubNet: a flexible system for visualizing literature derived networks.
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PubNet:一种可视化文献衍生网络的灵活系统。

DOI:
10.1186/gb-2005-6-9-r80
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发表时间:
2005
期刊:
影响因子:
12.3
通讯作者:
Gerstein, M
Gerstein, M
中科院分区:
生物学1区
文献类型:
--
作者:
Douglas, SM;Montelione, GT;Gerstein, M

文献摘要

参考文献

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相似文献

PubNet是一个基于Web的工具,用于提取PubMed查询返回的几种类型的关系,并将其映射到网络中。我们开发了PubNet,一个基于网络的工具,提取PubMed查询返回的几种类型的关系,并将它们映射到网络中,允许图形可视化,文本导航和拓扑分析。PubNet支持从单个引用的内容中创建复杂的网络,例如基因,蛋白质,蛋白质数据库(PDB)ID,医学主题词(MeSH)术语和作者。这个特征允许人们,例如,检查基于功能相似性的基因的文献衍生网络。
PubNet is a web-based tool to extract several types of relationships returned by PubMed queries and map them into networks. We have developed PubNet, a web-based tool that extracts several types of relationships returned by PubMed queries and maps them into networks, allowing for graphical visualization, textual navigation, and topological analysis. PubNet supports the creation of complex networks derived from the contents of individual citations, such as genes, proteins, Protein Data Bank (PDB) IDs, Medical Subject Headings (MeSH) terms, and authors. This feature allows one to, for example, examine a literature derived network of genes based on functional similarity.
DOI: 10.1186/1471-2105-5-147
发表时间: 2004-10-08
期刊: BMC bioinformatics
影响因子: 3
作者:
Chen H;Sharp BM
通讯作者: Sharp BM
DOI: 10.1073/pnas.142413399
发表时间: 2002-09-03
影响因子: 11.1
作者:
Lesley, SA;Kuhn, P;Stevens, RC
通讯作者: Stevens, RC
DOI: 10.1107/s0907444902014282
发表时间: 2002-10-01
期刊: ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
影响因子: --
作者:
Rupp, B;Segelke, BW;Earnest, T
通讯作者: Earnest, T
DOI: 10.1093/nar/gkh164
发表时间: 2004-01-01
影响因子: 14.9
作者:
Yu, HY;Zhu, XW;Gerstein, M
通讯作者: Gerstein, M
DOI: 10.1038/88213
发表时间: 2001-05-01
期刊: NATURE GENETICS
影响因子: 30.8
作者:
Jenssen, TK;Lægreid, A;Hovig, E
通讯作者: Hovig, E