Connecting high-throughput biodiversity inventories: Opportunities for a site-based genomic framework for global integration and synthesis.
Connecting high-throughput biodiversity inventories: Opportunities for a site-based genomic framework for global integration and synthesis.
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DOI：
10.1111/mec.15797
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发表时间：
2021-03
影响因子：
4.9
通讯作者：
Emerson BC
中科院分区：
文献类型：
--
作者：
Arribas P;Andújar C;Bidartondo MI;Bohmann K;Coissac É;Creer S;deWaard JR;Elbrecht V;Ficetola GF;Goberna M;Kennedy S;Krehenwinkel H;Leese F;Novotny V;Ronquist F;Yu DW;Zinger L;Creedy TJ;Meramveliotakis E;Noguerales V;Overcast I;Morlon H;Vogler AP;Papadopoulou A;Emerson BC
高通量测序(HTS)越来越多地被用于描述和监测生物多样性。如果以结构化的方式在广泛的地理范围内应用，它有可能通过整合在地方、区域和全球范围独立产生的大量分子清单数据来更深入地了解全球生物多样性。高温超导数据的广泛性、可靠性和效率有可能促进来自不同地点、不同多样性等级水平的物种组合之间的数据无缝连接，适用于任何分类类群，而与先前的分类知识无关。然而，需要国际集体努力，以最佳方式开发基于现场的高温超导数据的潜力，以进行全球整合和合成，目前的努力仅限于微生物领域。为促进制定非微生物陆地领域的类似战略，2019年11月在尼科西亚(塞浦路斯)举行了题为“下一代生物多样性监测”的国际专题讨论会。这次研讨会汇集了进化遗传学家、生态学家和生物多样性科学家，他们参与了利用高温超导作为生物多样性评估核心工具的各种区域和全球倡议。在这篇综述中，我们总结了为期3天的研讨会所达成的共识。我们一致认为，一个有效的全球生物多样性综合和合成陆地基因组观测站网络应该在元编码方法的保护伞下在空间上领导和战略上统一。随后，我们概述了一个基于HTS的战略，以共同构建一个基于站点的生物多样性数据生成的综合框架。
High‐throughput sequencing (HTS) is increasingly being used for the characterization and monitoring of biodiversity. If applied in a structured way, across broad geographical scales, it offers the potential for a much deeper understanding of global biodiversity through the integration of massive quantities of molecular inventory data generated independently at local, regional and global scales. The universality, reliability and efficiency of HTS data can potentially facilitate the seamless linking of data among species assemblages from different sites, at different hierarchical levels of diversity, for any taxonomic group and regardless of prior taxonomic knowledge. However, collective international efforts are required to optimally exploit the potential of site‐based HTS data for global integration and synthesis, efforts that at present are limited to the microbial domain. To contribute to the development of an analogous strategy for the nonmicrobial terrestrial domain, an international symposium entitled “Next Generation Biodiversity Monitoring” was held in November 2019 in Nicosia (Cyprus). The symposium brought together evolutionary geneticists, ecologists and biodiversity scientists involved in diverse regional and global initiatives using HTS as a core tool for biodiversity assessment. In this review, we summarize the consensus that emerged from the 3‐day symposium. We converged on the opinion that an effective terrestrial Genomic Observatories network for global biodiversity integration and synthesis should be spatially led and strategically united under the umbrella of the metabarcoding approach. Subsequently, we outline an HTS‐based strategy to collectively build an integrative framework for site‐based biodiversity data generation.
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DOI：
10.1038/ismej.2012.8
发表时间：
2012-08
期刊：
The ISME journal
影响因子：
--
作者：
通讯作者：
--
影响因子：
48
作者：
Callahan BJ;McMurdie PJ;Rosen MJ;Han AW;Johnson AJ;Holmes SP
通讯作者：
Holmes SP
影响因子：
--
作者：
Beentjes, Kevin K.;Speksnijder, Arjen G. C. L.;van der Hoorn, Berry B.
通讯作者：
van der Hoorn, Berry B.
影响因子：
4.9
作者：
Cicconardi, Francesco;Borges, Paulo A. V.;Emerson, Brent C.
通讯作者：
Emerson, Brent C.
影响因子：
6.6
作者：
Arribas, Paula;Andujar, Carmelo;Vogler, Alfried P.
通讯作者：
Vogler, Alfried P.