A standard protocol to report discrete stage-structured demographic information
A standard protocol to report discrete stage-structured demographic information
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报告离散阶段结构人口统计信息的标准协议
DOI：
10.1111/2041-210x.14164
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发表时间：
2023
影响因子：
6.6
通讯作者：
Gascoigne S
中科院分区：
文献类型：
--
作者：
Gascoigne S
基于阶段的人口统计方法，如矩阵种群模型（mpm），是解决生态学、进化生物学和保护科学中广泛的基本问题的有力工具。因此，目前全球有超过3000种mpm。这些数据正在进行数字化，并定期发布到两个大型开放获取在线存储库：COMPADRE植物矩阵数据库和COMADRE动物矩阵数据库。在过去十年中，COMPADRE和COMADRE的数据存档和管理以及随后的比较研究表明，mpm的参数化和报告方式存在明显差异。在这里，我们总结了当前最频繁出现的与MPM参数化和报告相关的问题，并概述了它们如何影响MPM的构建、分析和解释。为了量化mpm报告方式的变化，我们提出了一项调查的结果，该调查确定了手稿中经常未报告的mpm的关键方面。然后，我们筛选COMPADRE和COMADRE，以量化使用mpm从手稿中遗漏关键信息的频率。超过80%的受访研究人员（n= 60）表示，采用更标准化的方法报告mpm有明显的好处。此外，在COMPADRE和COMADRE评估的300个mpm中，超过85%的mpm遗漏了一个或多个对其准确解释至关重要的元素。基于这些见解，我们确定了MPM构建和沟通中可能出现的基本问题，并提供建议，以提高MPM及其所需元数据的清晰度、可重复性和未来研究。为了加强再现性并使研究人员能够充分利用他们的人口统计数据，我们在出版物中引入了一个标准化的方案来呈现mpm。该标准链接到www.compadre‐db.org，以便希望存档其mpm的作者可以在提交出版物之前这样做，遵循其他开放存取存储库（如DRYAD， Figshare和Zenodo）的示例。结合和标准化来自全球和整个生命树的种群参数化的mpm，为进化生物学、生态学和保护研究开辟了强大的研究机会。然而，这种潜力只能通过采用标准化方法来确保可重复性来充分实现。
Stage‐based demographic methods, such as matrix population models (MPMs), are powerful tools used to address a broad range of fundamental questions in ecology, evolutionary biology and conservation science. Accordingly, MPMs now exist for over 3000 species worldwide. These data are being digitised as an ongoing process and periodically released into two large open‐access online repositories: the COMPADRE Plant Matrix Database and the COMADRE Animal Matrix Database. During the last decade, data archiving and curation of COMPADRE and COMADRE, and subsequent comparative research, have revealed pronounced variation in how MPMs are parameterized and reported.Here, we summarise current issues related to the parameterisation and reporting of MPMs that arise most frequently and outline how they affect MPM construction, analysis, and interpretation. To quantify variation in how MPMs are reported, we present results from a survey identifying key aspects of MPMs that are frequently unreported in manuscripts. We then screen COMPADRE and COMADRE to quantify how often key pieces of information are omitted from manuscripts using MPMs.Over 80% of surveyed researchers (n= 60) state a clear benefit to adopting more standardised methodologies for reporting MPMs. Furthermore, over 85% of the 300 MPMs assessed from COMPADRE and COMADRE omitted one or more elements that are key to their accurate interpretation. Based on these insights, we identify fundamental issues that can arise from MPM construction and communication and provide suggestions to improve clarity, reproducibility and future research utilising MPMs and their required metadata. To fortify reproducibility and empower researchers to take full advantage of their demographic data, we introduce a standardised protocol to present MPMs in publications. This standard is linked to www.compadre‐db.org, so that authors wishing to archive their MPMs can do so prior to submission of publications, following examples from other open‐access repositories such as DRYAD, Figshare and Zenodo.Combining and standardising MPMs parameterized from populations around the globe and across the tree of life opens up powerful research opportunities in evolutionary biology, ecology and conservation research. However, this potential can only be fully realised by adopting standardised methods to ensure reproducibility.
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影响因子：
2.6
作者：
T. Okuyama
通讯作者：
T. Okuyama
具有控制意义的入侵狮子鱼基于阶段的矩阵种群模型
影响因子：
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作者：
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J. A. Rice
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影响因子：
1.6
作者：
S. V. van Daalen;H. Caswell
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H. Caswell
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影响因子：
3.1
作者：
Amanda R. Kocmoud;Hsiao‐Hsuan Wang;W. Grant;B. J. Gallaway
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B. J. Gallaway
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DOI：
--
发表时间：
2013
期刊：
影响因子：
--
作者：
D. Krueger;E. Rutherford;D. Mason
通讯作者：
D. Mason