Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics.
Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics.
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DOI：
10.1093/bioinformatics/bts080
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发表时间：
2012-04-01
期刊：
影响因子：
--
通讯作者：
Prins P
中科院分区：
文献类型：
--
作者：
Bonnal RJ;Aerts J;Githinji G;Goto N;MacLean D;Miller CA;Mishima H;Pagani M;Ramirez-Gonzalez R;Smant G;Strozzi F;Syme R;Vos R;Wennblom TJ;Woodcroft BJ;Katayama T;Prins P
Summary: Biogem provides a software development environment for the Ruby programming language, which encourages community-based software development for bioinformatics while lowering the barrier to entry and encouraging best practices. Biogem, with its targeted modular and decentralized approach, software generator, tools and tight web integration, is an improved general model for scaling up collaborative open source software development in bioinformatics. Availability: Biogem and modules are free and are OSS. Biogem runs on all systems that support recent versions of Ruby, including Linux, Mac OS X and Windows. Further information at http://www.biogems.info. A tutorial is available at http://www.biogems.info/howto.html Contact: bonnal@ingm.org
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影响因子：
5.8
作者：
Holland, R. C. G.;Down, T. A.;Pocock, M.;Prlic, A.;Huen, D.;James, K.;Foisy, S.;Draeger, A.;Yates, A.;Heuer, M.;Schreiber, M. J.
通讯作者：
Schreiber, M. J.
Biopython：用于计算分子生物学和生物信息学的免费 Python 工具。
DOI：
10.1093/bioinformatics/btp163
发表时间：
2009-06-01
期刊：
Bioinformatics (Oxford, England)
影响因子：
--
作者：
Cock PJ;Antao T;Chang JT;Chapman BA;Cox CJ;Dalke A;Friedberg I;Hamelryck T;Kauff F;Wilczynski B;de Hoon MJ
通讯作者：
de Hoon MJ
影响因子：
12.3
作者：
Gentleman RC;Carey VJ;Bates DM;Bolstad B;Dettling M;Dudoit S;Ellis B;Gautier L;Ge Y;Gentry J;Hornik K;Hothorn T;Huber W;Iacus S;Irizarry R;Leisch F;Li C;Maechler M;Rossini AJ;Sawitzki G;Smith C;Smyth G;Tierney L;Yang JY;Zhang J
通讯作者：
Zhang J
DOI：
10.1093/bioinformatics/btq475
发表时间：
2010-10-15
期刊：
Bioinformatics (Oxford, England)
影响因子：
--
作者：
Goto N;Prins P;Nakao M;Bonnal R;Aerts J;Katayama T
通讯作者：
Katayama T
影响因子：
7
作者：
Stajich, JE;Block, D;Birney, E
通讯作者：
Birney, E