OpenCFU, a new free and open-source software to count cell colonies and other circular objects.

OpenCFU, a new free and open-source software to count cell colonies and other circular objects.
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OpenCFU,一种新的免费和开源软件,可计算细胞菌落和其他圆形对象。

DOI:
10.1371/journal.pone.0054072
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发表时间:
2013
期刊:
影响因子:
3.7
通讯作者:
Geissmann Q
Geissmann Q
中科院分区:
综合性期刊3区
文献类型:
--
作者:
Geissmann Q

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对细胞集落等圆形物体进行计数对生物学家来说是一个重要的信息来源。尽管这项任务通常是耗时且主观的,但它仍然主要是手动执行的。本工作的目的是提供一种从数字图像和视频流中枚举圆形物体的新工具。在这里,我演示了创建的程序OpenCFU非常健壮、准确和快速。此外,它提供了对加工参数的控制,并在一个直观和现代的界面中实现。OpenCFU是一个跨平台的开源软件,可在http://opencfu.sourceforge.net免费获得。
Counting circular objects such as cell colonies is an important source of information for biologists. Although this task is often time-consuming and subjective, it is still predominantly performed manually. The aim of the present work is to provide a new tool to enumerate circular objects from digital pictures and video streams. Here, I demonstrate that the created program, OpenCFU, is very robust, accurate and fast. In addition, it provides control over the processing parameters and is implemented in an intuitive and modern interface. OpenCFU is a cross-platform and open-source software freely available at http://opencfu.sourceforge.net.
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