The complete chloroplast genome of an endemic plant to Korea, Cardamine amaraeformis Nakai.: genome structure and phylogenetic analysis.
The complete chloroplast genome of an endemic plant to Korea, Cardamine amaraeformis Nakai.: genome structure and phylogenetic analysis.
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DOI：
10.1080/23802359.2021.1955769
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发表时间：
2021
期刊：
影响因子：
--
通讯作者：
Park S
中科院分区：
文献类型：
--
作者：
Raman G;Park KT;Park S
The plant Cardamine amaraeformis Nakai. is considered an endemic plant to Korea. However, due to the similar morphological characteristics of C. amaraeformis with C. scutata, it is not easy to distinguish these two species. Here, the complete chloroplast genome of C. amaraeformis was sequenced and characterized. The chloroplast genome of C. amaraeformis was 155,598 bp in length, comprising a large single-copy (LSC) region of 84,574 bp and a small single-copy (SSC) region of 17,976 bp and a pair of inverted repeats (IRs) of 26,524 bp. The genome contained 131 genes, including 86 protein-coding (PCGs), 37 tRNA and 8 rRNA genes. Of those, 6 PCGs, 8 tRNA and 4 rRNA genes were duplicated in the IR region and one gene was a pseudogene. The GC content of the C. amaraeformis chloroplast genome was 36.3%. Phylogenetic analysis revealed that all Cardamine species formed a monophyletic clade and C. amaraeformis was closely associated with C. parviflora. Therefore, the present study could help to distinguish C. scutata and resolve the phylogenetic relationships among the Cardamine lineage.
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Al-Hemaid, F. M. A.
DOI：
10.5962/bhl.part.2391
发表时间：
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期刊：
JOURNAL OF THE ARNOLD ARBORETUM
影响因子：
--
作者：
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通讯作者：
ALSHEHBAZ, IA
Trimmomatic：用于 Illumina 序列数据的灵活修剪器。
DOI：
10.1093/bioinformatics/btu170
发表时间：
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期刊：
Bioinformatics (Oxford, England)
影响因子：
--
作者：
Bolger AM;Lohse M;Usadel B
通讯作者：
Usadel B
DOI：
10.1093/bioinformatics/btu033
发表时间：
2014-05-01
期刊：
Bioinformatics (Oxford, England)
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Stamatakis A
通讯作者：
Stamatakis A