poRe: an R package for the visualization and analysis of nanopore sequencing data.
poRe: an R package for the visualization and analysis of nanopore sequencing data.
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DOI：
10.1093/bioinformatics/btu590
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发表时间：
2015-01-01
期刊：
影响因子：
--
通讯作者：
Blaxter M
中科院分区：
文献类型：
--
作者：
Watson M;Thomson M;Risse J;Talbot R;Santoyo-Lopez J;Gharbi K;Blaxter M
动机：Oxford Nanopore MinION 设备代表了一种独特的测序技术。作为一款由笔记本电脑USB端口供电的移动测序设备，MinION具有巨大的应用潜力。为了实现这些应用程序，生物信息学社区需要设计和构建一套专门针对 MinION 数据的工具。结果：在这里，我们展示了 poRe，这是一个 R 包，使用户能够操作、组织、总结和可视化 MinION 纳米孔测序数据。作为 R 的软件包，poRe 已在 Windows、Linux 和 MacOSX 上进行了测试。至关重要的是，Windows 版本允许用户在连接到设备的 Windows 笔记本电脑上分析 MinION 数据。可用性和实施：poRe 作为 R 包在 http://sourceforge.net/projects/rpore/ 上发布。教程和更多信息请访问 https://sourceforge.net/p/rpore/wiki/Home/ 联系人：mick.watson@roslin.ed.ac.uk 补充信息：补充数据可在生物信息学在线获取。
Motivation: The Oxford Nanopore MinION device represents a unique sequencing technology. As a mobile sequencing device powered by the USB port of a laptop, the MinION has huge potential applications. To enable these applications, the bioinformatics community will need to design and build a suite of tools specifically for MinION data. Results: Here we present poRe, a package for R that enables users to manipulate, organize, summarize and visualize MinION nanopore sequencing data. As a package for R, poRe has been tested on Windows, Linux and MacOSX. Crucially, the Windows version allows users to analyse MinION data on the Windows laptop attached to the device. Availability and implementation: poRe is released as a package for R at http://sourceforge.net/projects/rpore/. A tutorial and further information are available at https://sourceforge.net/p/rpore/wiki/Home/ Contact: mick.watson@roslin.ed.ac.uk Supplementary information: Supplementary data are available at Bioinformatics online.
影响因子：
48
作者：
Bowers, Jayson;Mitchell, Judith;Beer, Eric;Buzby, Philip R.;Causey, Marie;Efcavitch, J. William;Jarosz, Mirna;Krzymanska-Olejnik, Edyta;Kung, Li;Lipson, Doron;Lowman, Geoffrey M.;Marappan, Subramanian;McInerney, Peter;Platt, Adam;Roy, Atanu;Siddiqi, Suhaib M.;Steinmann, Kathleen;Thompson, John F.
通讯作者：
Thompson, John F.
影响因子：
56.9
作者：
Eid, John;Fehr, Adrian;Turner, Stephen
通讯作者：
Turner, Stephen