poRe GUIs for parallel and real-time processing of MinION sequence data
poRe GUIs for parallel and real-time processing of MinION sequence data
复制标题
用于并行实时处理 MinION 序列数据的 poRe GUI
DOI：
10.1101/094979
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发表时间：
2016
期刊：
影响因子：
--
通讯作者：
Stewart R
中科院分区：
文献类型：
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作者：
Stewart R
MotivationOxford Nanopore的MinION设备已经迅速成熟，现在每次运行能够产生超过一百万次读取和几gb的序列数据。MinION输出的性质需要新的工具，这些工具易于由具有一系列计算技能的科学家使用，并且能够从MinION运行中快速简单地进行QC和数据提取。结果我们为R包poRe开发了两个gui，允许并行和实时处理MinION数据集。这两种gui都能够通过使用商品硬件的友好的点击界面从大型MinION数据集中提取序列和元数据。可用性和实现gui被封装在poRe中，可在SourceForge上获得：https://sourceforge.net/projects/rpore/files/.Documentation或在GitHub上获得：https://github.com/mw55309/poRe_docs。
MotivationOxford Nanopore’s MinION device has matured rapidly and is now capable of producing over one million reads and several gigabases of sequence data per run. The nature of the MinION output requires new tools that are easy to use by scientists with a range of computational skills and which enable quick and simple QC and data extraction from MinION runs.ResultsWe have developed two GUIs for the R package poRe that allow parallel and real-time processing of MinION datasets. Both GUIs are capable of extracting sequence- and meta- data from large MinION datasets via a friendly point-and-click interface using commodity hardware.Availability and ImplementationThe GUIs are packaged within poRe which is available on SourceForge: https://sourceforge.net/projects/rpore/files/.Documentation is available on GitHub: https://github.com/mw55309/poRe_docs.
影响因子：
5.2
作者：
Wang J;Moore NE;Deng YM;Eccles DA;Hall RJ
通讯作者：
Hall RJ
通过高通量纳米孔测序进行胞嘧啶变异体识别
DOI：
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发表时间：
2016
期刊：
bioRxiv
影响因子：
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作者：
Arthur C. Rand;Miten Jain;Jordan M. Eizenga;Audrey Musselman;Hugh E. Olsen;M. Akeson;B. Paten
通讯作者：
B. Paten