KeyPathwayMiner 4.0: condition-specific pathway analysis by combining multiple omics studies and networks with Cytoscape.

Sass, Steffen;Buettner, Florian;Theis, Fabian J.

Ulitsky I;Shamir R

Lotia S;Montojo J;Dong Y;Bader GD;Pico AR

Muzny, Donna M.;Bainbridge, Matthew N.;Chang, Kyle;Dinh, Huyen H.;Drummond, Jennifer A.;Fowler, Gerald;Kovar, Christie L.;Lewis, Lora R.;Morgan, Margaret B.;Newsham, Irene F.;Reid, Jeffrey G.;Santibanez, Jireh;Shinbrot, Eve;Trevino, Lisa R.;Wu, Yuan-Qing;Wang, Min;Gunaratne, Preethi;Donehower, Lawrence A.;Creighton, Chad J.;Wheeler, David A.;Gibbs, Richard A.;Lawrence, Michael S.;Voet, Douglas;Jing, Rui;Cibulskis, Kristian;Sivachenko, Andrey;Stojanov, Petar;McKenna, Aaron;Lander, Eric S.;Gabriel, Stacey;Getz, Gad;Ding, Li;Fulton, Robert S.;Koboldt, Daniel C.;Wylie, Todd;Walker, Jason;Dooling, David J.;Fulton, Lucinda;Delehaunty, Kim D.;Fronick, Catrina C.;Demeter, Ryan;Mardis, Elaine R.;Wilson, Richard K.;Chu, Andy;Chun, Hye-Jung E.;Mungall, Andrew J.;Pleasance, Erin;Robertson, A. Gordon;Stoll, Dominik;Balasundaram, Miruna;Birol, Inanc;Butterfield, Yaron S. N.;Chuah, Eric;Coope, Robin J. N.;Dhalla, Noreen;Guin, Ranabir;Hirst, Carrie;Hirst, Martin;Holt, Robert A.;Lee, Darlene;Li, Haiyan I.;Mayo, Michael;Moore, Richard A.;Schein, Jacqueline E.;Slobodan, Jared R.;Tam, Angela;Thiessen, Nina;Varhol, Richard;Zeng, Thomas;Zhao, Yongjun;Jones, Steven J. M.;Marra, Marco A.;Bass, Adam J.;Ramos, Alex H.;Saksena, Gordon;Cherniack, Andrew D.;Schumacher, Stephen E.;Tabak, Barbara;Carter, Scott L.;Pho, Nam H.;Nguyen, Huy;Onofrio, Robert C.;Crenshaw, Andrew;Ardlie, Kristin;Beroukhim, Rameen;Winckler, Wendy;Getz, Gad;Meyerson, Matthew;Protopopov, Alexei;Zhang, Juinhua;Hadjipanayis, Angela;Lee, Eunjung;Xi, Ruibin;Yang, Lixing;Ren, Xiaojia;Zhang, Hailei;Sathiamoorthy, Narayanan;Shukla, Sachet;Chen, Peng-Chieh;Haseley, Psalm;Xiao, Yonghong;Lee, Semin;Seidman, Jonathan;Chin, Lynda;Park, Peter J.;Kucherlapati, Raju;Auman, J. Todd;Hoadley, Katherine A.;Du, Ying;Wilkerson, Matthew D.;Shi, Yan;Liquori, Christina;Meng, Shaowu;Li, Ling;Turman, Yidi J.;Topal, Michael D.;Tan, Donghui;Waring, Scot;Buda, Elizabeth;Walsh, Jesse;Jones, Corbin D.;Mieczkowski, Piotr A.;Singh, Darshan;Wu, Junyuan;Gulabani, Anisha;Dolina, Peter;Bodenheimer, Tom;Hoyle, Alan P.;Simons, Janae V.;Soloway, Matthew;Mose, Lisle E.;Jefferys, Stuart R.;Balu, Saianand;O'Connor, Brian D.;Prins, Jan F.;Chiang, Derek Y.;Hayes, D. Neil;Perou, Charles M.;Hinoue, Toshinori;Weisenberger, Daniel J.;Maglinte, Dennis T.;Pan, Fei;Berman, Benjamin P.;Van den Berg, David J.;Shen, Hui;Triche, Timothy, Jr.;Baylin, Stephen B.;Laird, Peter W.;Getz, Gad;Noble, Michael;Voet, Doug;Saksena, Gordon;Gehlenborg, Nils;DiCara, Daniel;Zhang, Juinhua;Zhang, Hailei;Wu, Chang-Jiun;Liu, Spring Yingchun;Shukla, Sachet;Lawrence, Michael S.;Zhou, Lihua;Sivachenko, Andrey;Lin, Pei;Stojanov, Petar;Jing, Rui;Park, Richard W.;Nazaire, Marc-Danie;Robinson, Jim;Thorvaldsdottir, Helga;Mesirov, Jill;Park, Peter J.;Chin, Lynda;Thorsson, Vesteinn;Reynolds, Sheila M.;Bernard, Brady;Kreisberg, Richard;Lin, Jake;Iype, Lisa;Bressler, Ryan;Erkkilae, Timo;Gundapuneni, Madhumati;Liu, Yuexin;Norberg, Adam;Robinson, Tom;Da Yang;Zhang, Wei;Shmulevich, Ilya;De Ronde, Jorma J.;Schultz, Nikolaus;Cerami, Ethan;Ciriello, Giovanni;Goldberg, Arthur P.;Gross, Benjamin;Jacobsen, Anders;Gao, Jianjiong;Kaczkowski, Bogumil;Sinha, Rileen;Aksoy, B. Arman;Antipin, Yevgeniy;Reva, Boris;Shen, Ronglai;Taylor, Barry S.;Chan, Timothy A.;Ladanyi, Marc;Sander, Chris;Akbani, Rehan;Zhang, Nianxiang;Broom, Bradley M.;Casasent, Tod;Unruh, Anna;Wakefield, Chris;Hamilton, Stanley R.;Cason, R. Craig;Baggerly, Keith A.;Weinstein, John N.;Haussler, David;Benz, Christopher C.;Stuart, Joshua M.;Benz, Stephen C.;Sanborn, J. Zachary;Vaske, Charles J.;Zhu, Jingchun;Szeto, Christopher;Scott, Gary K.;Yau, Christina;Ng, Sam;Goldstein, Ted;Ellrott, Kyle;Collisson, Eric;Cozen, Aaron E.;Zerbino, Daniel;Wilks, Christopher;Craft, Brian;Spellman, Paul;Penny, Robert;Shelton, Troy;Hatfield, Martha;Morris, Scott;Yena, Peggy;Shelton, Candace;Sherman, Mark;Paulauskis, Joseph;Gastier-Foster, Julie M.;Bowen, Jay;Ramirez, Nilsa C.;Black, Aaron;Pyatt, Robert;Wise, Lisa;White, Peter;Bertagnolli, Monica;Brown, Jen;Chan, Timothy A.;Chu, Gerald C.;Czerwinski, Christine;Denstman, Fred;Dhir, Rajiv;Doerner, Arnulf;Fuchs, Charles S.;Guillem, Jose G.;Iacocca, Mary;Juhl, Hartmut;Kaufman, Andrew;Kohl, Bernard, III;Van Le, Xuan;Mariano, Maria C.;Medina, Elizabeth N.;Meyers, Michael;Nash, Garrett M.;Paty, Phillip B.;Petrelli, Nicholas;Rabeno, Brenda;Richards, William G.;Solit, David;Swanson, Pat;Temple, Larissa;Tepper, Joel E.;Thorp, Richard;Vakiani, Efsevia;Weiser, Martin R.;Willis, Joseph E.;Witkin, Gary;Zeng, Zhaoshi;Zinner, Michael J.;Zornig, Carsten;Jensen, Mark A.;Sfeir, Robert;Kahn, Ari B.;Chu, Anna L.;Kothiyal, Prachi;Wang, Zhining;Snyder, Eric E.;Pontius, Joan;Pihl, Todd D.;Ayala, Brenda;Backus, Mark;Walton, Jessica;Whitmore, Jon;Baboud, Julien;Berton, Dominique L.;Nicholls, Matthew C.;Srinivasan, Deepak;Raman, Rohini;Girshik, Stanley;Kigonya, Peter A.;Alonso, Shelley;Sanbhadti, Rashmi N.;Barletta, Sean P.;Greene, John M.;Pot, David A.;Shaw, Kenna R. Mills;Dillon, Laura A. L.;Buetow, Ken;Davidsen, Tanja;Demchok, John A.;Eley, Greg;Ferguson, Martin;Fielding, Peter;Schaefer, Carl;Sheth, Margi;Yang, Liming;Guyer, Mark S.;Ozenberger, Bradley A.;Palchik, Jacqueline D.;Peterson, Jane;Sofia, Heidi J.;Thomson, Elizabeth