Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data.

Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data.
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DOI:
10.1186/s13059-018-1491-4
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发表时间:
2018-08-17
期刊:
影响因子:
12.3
通讯作者:
Quesneville H
Quesneville H
中科院分区:
生物学1区
文献类型:
--
作者:
Alaux M;Rogers J;Letellier T;Flores R;Alfama F;Pommier C;Mohellibi N;Durand S;Kimmel E;Michotey C;Guerche C;Loaec M;Lainé M;Steinbach D;Choulet F;Rimbert H;Leroy P;Guilhot N;Salse J;Feuillet C;International Wheat Genome Sequencing Consortium;Paux E;Eversole K;Adam-Blondon AF;Quesneville H

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Wheat@URGI门户网站的开发旨在为国际研究人员和育种者提供国际小麦基因组测序联盟生产的面包小麦参考基因组序列。已经建立了基因组浏览器,BLAST和InterMine工具,用于深入探索基因组序列以及其他相关数据集,包括物理图谱,序列变异,基因表达以及已存储在GnpIS信息系统中的其他国际合作项目的遗传和表型数据。该门户网站提供了增强的搜索和浏览器功能,这将有助于在小麦改良中部署最新的基因组学资源。本文的在线版本(10.1186/s13059-018-1491-4)包含补充材料,可供授权用户使用。
The Wheat@URGI portal has been developed to provide the international community of researchers and breeders with access to the bread wheat reference genome sequence produced by the International Wheat Genome Sequencing Consortium. Genome browsers, BLAST, and InterMine tools have been established for in-depth exploration of the genome sequence together with additional linked datasets including physical maps, sequence variations, gene expression, and genetic and phenomic data from other international collaborative projects already stored in the GnpIS information system. The portal provides enhanced search and browser features that will facilitate the deployment of the latest genomics resources in wheat improvement. The online version of this article (10.1186/s13059-018-1491-4) contains supplementary material, which is available to authorized users.
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