Identification of consensus binding sites clarifies FMRP binding determinants.
Identification of consensus binding sites clarifies FMRP binding determinants.
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DOI：
10.1093/nar/gkw593
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发表时间：
2016-08-19
影响因子：
14.9
通讯作者：
Bassell GJ
中科院分区：
文献类型：
--
作者：
Anderson BR;Chopra P;Suhl JA;Warren ST;Bassell GJ
Fragile X mental retardation protein (FMRP) is a multifunctional RNA-binding protein with crucial roles in neuronal development and function. Efforts aimed at elucidating how FMRP target mRNAs are selected have produced divergent sets of target mRNA and putative FMRP-bound motifs, and a clear understanding of FMRP's binding determinants has been lacking. To clarify FMRP's binding to its target mRNAs, we produced a shared dataset of FMRP consensus binding sequences (FCBS), which were reproducibly identified in two published FMRP CLIP sequencing datasets. This comparative dataset revealed that of the various sequence and structural motifs that have been proposed to specify FMRP binding, the short sequence motifs TGGA and GAC were corroborated, and a novel TAY motif was identified. In addition, the distribution of the FCBS set demonstrates that FMRP preferentially binds to the coding region of its targets but also revealed binding along 3′ UTRs in a subset of target mRNAs. Beyond probing these putative motifs, the FCBS dataset of reproducibly identified FMRP binding sites is a valuable tool for investigating FMRP targets and function.
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DOI：
10.1016/s0006-291x(03)00766-6
发表时间：
2003-05-30
影响因子：
3.1
作者：
Dolzhanskaya, N;Sung, YJ;Denman, RB
通讯作者：
Denman, RB
影响因子：
64.5
作者：
Hafner M;Landthaler M;Burger L;Khorshid M;Hausser J;Berninger P;Rothballer A;Ascano M Jr;Jungkamp AC;Munschauer M;Ulrich A;Wardle GS;Dewell S;Zavolan M;Tuschl T
通讯作者：
Tuschl T
影响因子：
11.4
作者：
Schaeffer, C;Bardoni, B;Moine, H
通讯作者：
Moine, H
影响因子：
64.8
作者：
通讯作者：
--
模因套件：用于发现和搜索的工具。
影响因子：
14.9
作者：
Bailey TL;Boden M;Buske FA;Frith M;Grant CE;Clementi L;Ren J;Li WW;Noble WS
通讯作者：
Noble WS