Multi-task learning based structured sparse canonical correlation analysis for brain imaging genetics.
Multi-task learning based structured sparse canonical correlation analysis for brain imaging genetics.
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DOI：
10.1016/j.media.2021.102297
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发表时间：
2022-03
影响因子：
10.9
通讯作者：
Shen L
中科院分区：
文献类型：
--
作者：
Kim M;Min EJ;Liu K;Yan J;Saykin AJ;Moore JH;Long Q;Shen L
脑成像和高通量基因数据获取技术的进步使研究人员能够访问大量的多模式数据。虽然稀疏典型相关分析是一种用于特征选择的强大的双多变量关联分析技术，但我们在整合多模式成像遗传数据和对成像遗传发现进行生物学意义解释方面仍然面临着重大挑战。在这项研究中，我们提出了一种新的基于多任务学习的结构化稀疏典型相关分析(MTS2CCA)来提供可解释的结果并提高成像遗传学研究的集成度。我们用最先进的竞争性方法对模拟和真实成像遗传数据进行比较研究。在仿真数据上，我们提出的模型在典型相关系数、估计精度和特征选择精度方面取得了最好的性能。在真实的成像遗传数据上，我们提出的模型揭示了单核苷酸多态和与睡眠相关的大脑区域的有希望的特征。所识别的特征可用于使用有前景的成像遗传生物标记物来改进临床评分预测。未来一个有趣的方向是将我们的模型应用于更多的神经学或精神病学队列，如阿尔茨海默氏症或帕金森氏病患者，以证明我们方法的普适性。
The advances in technologies for acquiring brain imaging and high-throughput genetic data allow the researcher to access a large amount of multi-modal data. Although the sparse canonical correlation analysis is a powerful bi-multivariate association analysis technique for feature selection, we are still facing major challenges in integrating multi-modal imaging genetic data and yielding biologically meaningful interpretation of imaging genetic findings. In this study, we propose a novel multi-task learning based structured sparse canonical correlation analysis (MTS2CCA) to deliver interpretable results and improve integration in imaging genetics studies. We perform comparative studies with state-of-the-art competing methods on both simulation and real imaging genetic data. On the simulation data, our proposed model has achieved the best performance in terms of canonical correlation coefficients, estimation accuracy, and feature selection accuracy. On the real imaging genetic data, our proposed model has revealed promising features of single-nucleotide polymorphisms and brain regions related to sleep. The identified features can be used to improve clinical score prediction using promising imaging genetic biomarkers. An interesting future direction is to apply our model to additional neurological or psychiatric cohorts such as patients with Alzheimer’s or Parkinson’s disease to demonstrate the generalizability of our method.
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