Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.
Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.
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DOI：
10.1093/bioinformatics/bts199
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发表时间：
2012-06-15
期刊：
影响因子：
--
通讯作者：
Drummond A
中科院分区：
文献类型：
--
作者：
Kearse M;Moir R;Wilson A;Stones-Havas S;Cheung M;Sturrock S;Buxton S;Cooper A;Markowitz S;Duran C;Thierer T;Ashton B;Meintjes P;Drummond A
生物信息学的两个主要功能是使用计算资源组织和分析生物数据。Geneious Basic被设计成一个易于使用和灵活的桌面软件应用程序框架，用于组织和分析生物数据，重点是分子序列和相关数据类型。它集成了许多行业标准的发现分析工具，并具有交互式可视化功能，可生成可用于发布的图像。对生命科学研究人员的一个关键贡献是Geneious公共应用程序编程接口（API），该接口能够利用Geneious Basic软件平台的现有框架进行几乎无限的扩展和定制。其结果是，由于通过公共API向开发人员提供的功能和图形用户界面，提高了生命科学计算工具的开发速度和质量。Geneious Basic是生物信息学社区利用现有组件并整合其自身特定要求以发现、分析和可视化生物数据的理想平台。可用性和实施：二进制文件和公共API可从http：//www.geneious.com/basic免费下载，用Java实现，并在Linux、Apple OSX和MS Windows上得到支持。该软件也可以从Bio-Linux软件包存储库http://nebc.nerc.ac.uk/news/geneiousonbl获得。联系方式：peter@biomatters.com
Summary: The two main functions of bioinformatics are the organization and analysis of biological data using computational resources. Geneious Basic has been designed to be an easy-to-use and flexible desktop software application framework for the organization and analysis of biological data, with a focus on molecular sequences and related data types. It integrates numerous industry-standard discovery analysis tools, with interactive visualizations to generate publication-ready images. One key contribution to researchers in the life sciences is the Geneious public application programming interface (API) that affords the ability to leverage the existing framework of the Geneious Basic software platform for virtually unlimited extension and customization. The result is an increase in the speed and quality of development of computation tools for the life sciences, due to the functionality and graphical user interface available to the developer through the public API. Geneious Basic represents an ideal platform for the bioinformatics community to leverage existing components and to integrate their own specific requirements for the discovery, analysis and visualization of biological data. Availability and implementation: Binaries and public API freely available for download at http://www.geneious.com/basic, implemented in Java and supported on Linux, Apple OSX and MS Windows. The software is also available from the Bio-Linux package repository at http://nebc.nerc.ac.uk/news/geneiousonbl. Contact: peter@biomatters.com
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DOI：
10.1093/bioinformatics/btq675
发表时间：
2011-02-01
期刊：
Bioinformatics (Oxford, England)
影响因子：
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作者：
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通讯作者：
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影响因子：
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12.3
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