Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data.
Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data.
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DOI：
10.1093/database/bay002
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发表时间：
2018-01-01
期刊：
影响因子：
--
通讯作者：
Burley SK
中科院分区：
文献类型：
--
作者：
Young JY;Westbrook JD;Feng Z;Peisach E;Persikova I;Sala R;Sen S;Berrisford JM;Swaminathan GJ;Oldfield TJ;Gutmanas A;Igarashi R;Armstrong DR;Baskaran K;Chen L;Chen M;Clark AR;Di Costanzo L;Dimitropoulos D;Gao G;Ghosh S;Gore S;Guranovic V;Hendrickx PMS;Hudson BP;Ikegawa Y;Kengaku Y;Lawson CL;Liang Y;Mak L;Mukhopadhyay A;Narayanan B;Nishiyama K;Patwardhan A;Sahni G;Sanz-García E;Sato J;Sekharan MR;Shao C;Smart OS;Tan L;van Ginkel G;Yang H;Zhuravleva MA;Markley JL;Nakamura H;Kurisu G;Kleywegt GJ;Velankar S;Berman HM;Burley SK
蛋白质数据库（PDB）是实验确定的生物大分子及其配体复合物的三维结构的单一全球存储库。全球PDB （wwPDB）是一个根据FAIR原则管理PDB档案的国际合作组织：可查找性、可访问性、互操作性和可重用性。wwPDB最近开发了OneDep，这是一种用于生物大分子结构沉积、验证和生物固化的统一工具。所有存储到PDB的数据都经过wwPDB生物保管员的严格审查。本文概述了保存到PDB的结构生物学数据的生物保存的重要性，并描述了wwPDB生物保存过程和专家生物保存员在维持高质量档案中的作用。提交给PDB的结构数据进行自一致性检查，使用受控词汇进行标准化，与其他生物数据资源交叉引用，并验证科学/技术准确性。我们说明了生物定位是PDB数据归档的一部分，因为它促进了生物结构数据的准确、一致和全面的表示，允许研究科学家、教育工作者、学生和全世界好奇的公众高效和有效地使用。数据库地址：https://www.wwpdb.org/
The Protein Data Bank (PDB) is the single global repository for experimentally determined 3D structures of biological macromolecules and their complexes with ligands. The worldwide PDB (wwPDB) is the international collaboration that manages the PDB archive according to the FAIR principles: Findability, Accessibility, Interoperability and Reusability. The wwPDB recently developed OneDep, a unified tool for deposition, validation and biocuration of structures of biological macromolecules. All data deposited to the PDB undergo critical review by wwPDB Biocurators. This article outlines the importance of biocuration for structural biology data deposited to the PDB and describes wwPDB biocuration processes and the role of expert Biocurators in sustaining a high-quality archive. Structural data submitted to the PDB are examined for self-consistency, standardized using controlled vocabularies, cross-referenced with other biological data resources and validated for scientific/technical accuracy. We illustrate how biocuration is integral to PDB data archiving, as it facilitates accurate, consistent and comprehensive representation of biological structure data, allowing efficient and effective usage by research scientists, educators, students and the curious public worldwide. Database URL: https://www.wwpdb.org/
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DOI：
10.1016/j.str.2017.10.009
发表时间：
2017-12-05
期刊：
Structure (London, England : 1993)
影响因子：
--
作者：
Gore S;Sanz García E;Hendrickx PMS;Gutmanas A;Westbrook JD;Yang H;Feng Z;Baskaran K;Berrisford JM;Hudson BP;Ikegawa Y;Kobayashi N;Lawson CL;Mading S;Mak L;Mukhopadhyay A;Oldfield TJ;Patwardhan A;Peisach E;Sahni G;Sekharan MR;Sen S;Shao C;Smart OS;Ulrich EL;Yamashita R;Quesada M;Young JY;Nakamura H;Markley JL;Berman HM;Burley SK;Velankar S;Kleywegt GJ
通讯作者：
Kleywegt GJ
影响因子：
5.7
作者：
Shao, Chenghua;Yang, Huanwang;Burley, Stephen K.
通讯作者：
Burley, Stephen K.
影响因子：
4.8
作者：
Shao, Chenghua;Zhang, Fuming;Seaton, Barbara A.
通讯作者：
Seaton, Barbara A.
影响因子：
5.6
作者：
Schlieben, NH;Niefind, K;Schomburg, D
通讯作者：
Schomburg, D
影响因子：
14.9
作者：
Henrick K;Feng Z;Bluhm WF;Dimitropoulos D;Doreleijers JF;Dutta S;Flippen-Anderson JL;Ionides J;Kamada C;Krissinel E;Lawson CL;Markley JL;Nakamura H;Newman R;Shimizu Y;Swaminathan J;Velankar S;Ory J;Ulrich EL;Vranken W;Westbrook J;Yamashita R;Yang H;Young J;Yousufuddin M;Berman HM
通讯作者：
Berman HM