ISfinder: the reference centre for bacterial insertion sequences.
ISfinder: the reference centre for bacterial insertion sequences.
复制标题
ISFINDER：细菌插入序列的参考中心。
DOI：
10.1093/nar/gkj014
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发表时间：
2006-01-01
影响因子：
14.9
通讯作者：
Chandler, M.
中科院分区：
文献类型：
--
作者：
Siguier, P.;Perochon, J.;Lestrade, L.;Mahillon, J.;Chandler, M.
ISfinder()是细菌插入序列(IS)的专用数据库。它已经取代了斯坦福参考中心。其功能之一是指定 IS 名称并为一致的命名法提供焦点。它也是 IS 的存储库。每个新的 IS 都与诸如其 DNA 序列和开放阅读框或潜在编码序列、元素末端序列和目标位点、其起源和分布以及可用的参考书目等信息一起编入索引。另一个目标是持续监测 IS，以提供更新的综合分组或家族，并提供对其系统发育的一些见解。该网站还包含有关 IS 和转座子的广泛背景信息。在线工具正在逐渐添加。目前，可以使用针对整个银行的在线 Blast 工具。但其他功能将包括对齐功能、PsiBLAST 和 HMM 配置文件。 ISfinder 还包括关于细菌基因组的部分，并参与注释这些基因组的 IS 内容。最后，该数据库目前被多家微生物学期刊推荐用于在出版前注册新的 IS 元素。
ISfinder () is a dedicated database for bacterial insertion sequences (ISs). It has superseded the Stanford reference center. One of its functions is to assign IS names and to provide a focal point for a coherent nomenclature. It is also the repository for ISs. Each new IS is indexed together with information such as its DNA sequence and open reading frames or potential coding sequences, the sequence of the ends of the element and target sites, its origin and distribution together with a bibliography where available. Another objective is to continuously monitor ISs to provide updated comprehensive groupings or families and to provide some insight into their phylogenies. The site also contains extensive background information on ISs and transposons in general. Online tools are gradually being added. At present an online Blast facility against the entire bank is available. But additional features will include alignment capability, PsiBLAST and HMM profiles. ISfinder also includes a section on bacterial genomes and is involved in annotating the IS content of these genomes. Finally, this database is currently recommended by several microbiology journals for registration of new IS elements before their publication.
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影响因子：
3.6
作者：
De Palmenaer, D;Vermeiren, C;Mahillon, J
通讯作者：
Mahillon, J
影响因子：
14.9
作者：
Leplae, R;Hebrant, A;Toussaint, A
通讯作者：
Toussaint, A
影响因子：
3.5
作者：
Buisine, N;Tang, CM;Chalmers, R
通讯作者：
Chalmers, R
影响因子：
3.5
作者：
CAMPBELL, A;BERG, DE;SZYBALSKI, W
通讯作者：
SZYBALSKI, W