LNCipedia 5: towards a reference set of human long non-coding RNAs.
LNCipedia 5: towards a reference set of human long non-coding RNAs.
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DOI：
10.1093/nar/gky1031
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发表时间：
2019-01-08
影响因子：
14.9
通讯作者：
Vandesompele J
中科院分区：
文献类型：
--
作者：
Volders PJ;Anckaert J;Verheggen K;Nuytens J;Martens L;Mestdagh P;Vandesompele J
虽然过去长期的非编码RNA（lncRNA）研究主要集中在发现新基因上，但今天它已转向这一大类基因的功能注释。随着每年发表的成千上万的lncRNA研究，目前的挑战在于跟踪哪些lncRNA在功能上被描述。lncRNA命名法并不简单，lncRNA注释分散在不同的资源中，具有自己的质量指标和lncRNA的定义，这进一步使其复杂化。为了克服这个问题，需要大规模的策展和注释。在这里，我们介绍了人类lncRNA数据库LNCipedia（https：//www.example.com）的第五版。lncipedia.org最显着的改进包括2482 lncRNA文章的手动文献策展和官方基因符号的使用。此外，改进的过滤管道导致更高质量的参考lncRNA基因集。
While long non-coding RNA (lncRNA) research in the past has primarily focused on the discovery of novel genes, today it has shifted towards functional annotation of this large class of genes. With thousands of lncRNA studies published every year, the current challenge lies in keeping track of which lncRNAs are functionally described. This is further complicated by the fact that lncRNA nomenclature is not straightforward and lncRNA annotation is scattered across different resources with their own quality metrics and definition of a lncRNA. To overcome this issue, large scale curation and annotation is needed. Here, we present the fifth release of the human lncRNA database LNCipedia (https://lncipedia.org). The most notable improvements include manual literature curation of 2482 lncRNA articles and the use of official gene symbols when available. In addition, an improved filtering pipeline results in a higher quality reference lncRNA gene set.
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LncMAP：长非编码 RNA 介导的转录网络扰动的泛癌图谱
影响因子：
14.9
作者：
Li Y;Li L;Wang Z;Pan T;Sahni N;Jin X;Wang G;Li J;Zheng X;Zhang Y;Xu J;Yi S;Li X
通讯作者：
Li X
长期非编码RNA生物学的状态。
影响因子：
4.3
作者：
Mattick JS
通讯作者：
Mattick JS
影响因子：
12.3
作者：
Marchese FP;Raimondi I;Huarte M
通讯作者：
Huarte M
影响因子：
7
作者：
Harrow J;Frankish A;Gonzalez JM;Tapanari E;Diekhans M;Kokocinski F;Aken BL;Barrell D;Zadissa A;Searle S;Barnes I;Bignell A;Boychenko V;Hunt T;Kay M;Mukherjee G;Rajan J;Despacio-Reyes G;Saunders G;Steward C;Harte R;Lin M;Howald C;Tanzer A;Derrien T;Chrast J;Walters N;Balasubramanian S;Pei B;Tress M;Rodriguez JM;Ezkurdia I;van Baren J;Brent M;Haussler D;Kellis M;Valencia A;Reymond A;Gerstein M;Guigó R;Hubbard TJ
通讯作者：
Hubbard TJ
影响因子：
14.9
作者：
The RNAcentral Consortium;Petrov AI;Kay SJE;Kalvari I;Howe KL;Gray KA;Bruford EA;Kersey PJ;Cochrane G;Finn RD;Bateman A;Kozomara A;Griffiths-Jones S;Frankish A;Zwieb CW;Lau BY;Williams KP;Chan PP;Lowe TM;Cannone JJ;Gutell R;Machnicka MA;Bujnicki JM;Yoshihama M;Kenmochi N;Chai B;Cole JR;Szymanski M;Karlowski WM;Wood V;Huala E;Berardini TZ;Zhao Y;Chen R;Zhu W;Paraskevopoulou MD;Vlachos IS;Hatzigeorgiou AG;Ma L;Zhang Z;Puetz J;Stadler PF;McDonald D;Basu S;Fey P;Engel SR;Cherry JM;Volders PJ;Mestdagh P;Wower J;Clark MB;Quek XC;Dinger ME
通讯作者：
Dinger ME