Ensembl Genomes 2022: an expanding genome resource for non-vertebrates.
Ensembl Genomes 2022: an expanding genome resource for non-vertebrates.
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Ensembl Genomes 2022：非脊椎动物的扩展基因组资源。
DOI：
10.1093/nar/gkab1007
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发表时间：
2022-01-07
影响因子：
14.9
通讯作者：
Flicek P
中科院分区：
文献类型：
--
作者：
Yates AD;Allen J;Amode RM;Azov AG;Barba M;Becerra A;Bhai J;Campbell LI;Carbajo Martinez M;Chakiachvili M;Chougule K;Christensen M;Contreras-Moreira B;Cuzick A;Da Rin Fioretto L;Davis P;De Silva NH;Diamantakis S;Dyer S;Elser J;Filippi CV;Gall A;Grigoriadis D;Guijarro-Clarke C;Gupta P;Hammond-Kosack KE;Howe KL;Jaiswal P;Kaikala V;Kumar V;Kumari S;Langridge N;Le T;Luypaert M;Maslen GL;Maurel T;Moore B;Muffato M;Mushtaq A;Naamati G;Naithani S;Olson A;Parker A;Paulini M;Pedro H;Perry E;Preece J;Quinton-Tulloch M;Rodgers F;Rosello M;Ruffier M;Seager J;Sitnik V;Szpak M;Tate J;Tello-Ruiz MK;Trevanion SJ;Urban M;Ware D;Wei S;Williams G;Winterbottom A;Zarowiecki M;Finn RD;Flicek P
Ensembl Genomes（www.ensemblgenomes.org）提供了对非脊椎动物基因组的访问和对Ensembl项目（https：//www.example.com）开发的脊椎动物资源的分析补充。www.ensembl.org这两个资源通过一组一致的界面共同呈现基因组注释，这些界面跨越生命之树，呈现基因组序列、注释、变异、转录组数据和比较分析。在这里，我们介绍了自该项目成立以来植物、后生动物和真菌基因组的最大增长，创造了世界上最全面的基因组资源之一，并描述了我们为减少细菌门户网站中的基因组冗余所做的努力。我们详细介绍了我们在基因注释方面的新努力，我们对泛基因组分析的新兴支持，我们通过Ensembl快速发布资源和我们新的AlphaFold可视化加速数据传播的努力。最后，我们介绍了我们未来计划的细节，包括我们与Ensembl整合的最新情况，以及我们计划如何改善对微生物研究界的支持。软件和数据可通过我们的网站、在线工具平台和编程接口（在Apache 2.0许可下提供）不受限制地提供。数据更新与Ensembl的发布周期同步。
Ensembl Genomes (https://www.ensemblgenomes.org) provides access to non-vertebrate genomes and analysis complementing vertebrate resources developed by the Ensembl project (https://www.ensembl.org). The two resources collectively present genome annotation through a consistent set of interfaces spanning the tree of life presenting genome sequence, annotation, variation, transcriptomic data and comparative analysis. Here, we present our largest increase in plant, metazoan and fungal genomes since the project's inception creating one of the world's most comprehensive genomic resources and describe our efforts to reduce genome redundancy in our Bacteria portal. We detail our new efforts in gene annotation, our emerging support for pangenome analysis, our efforts to accelerate data dissemination through the Ensembl Rapid Release resource and our new AlphaFold visualization. Finally, we present details of our future plans including updates on our integration with Ensembl, and how we plan to improve our support for the microbial research community. Software and data are made available without restriction via our website, online tools platform and programmatic interfaces (available under an Apache 2.0 license). Data updates are synchronised with Ensembl's release cycle.
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影响因子：
14.9
作者：
Harrison PW;Ahamed A;Aslam R;Alako BTF;Burgin J;Buso N;Courtot M;Fan J;Gupta D;Haseeb M;Holt S;Ibrahim T;Ivanov E;Jayathilaka S;Balavenkataraman Kadhirvelu V;Kumar M;Lopez R;Kay S;Leinonen R;Liu X;O'Cathail C;Pakseresht A;Park Y;Pesant S;Rahman N;Rajan J;Sokolov A;Vijayaraja S;Waheed Z;Zyoud A;Burdett T;Cochrane G
通讯作者：
Cochrane G
影响因子：
14.9
作者：
Blum M;Chang HY;Chuguransky S;Grego T;Kandasaamy S;Mitchell A;Nuka G;Paysan-Lafosse T;Qureshi M;Raj S;Richardson L;Salazar GA;Williams L;Bork P;Bridge A;Gough J;Haft DH;Letunic I;Marchler-Bauer A;Mi H;Natale DA;Necci M;Orengo CA;Pandurangan AP;Rivoire C;Sigrist CJA;Sillitoe I;Thanki N;Thomas PD;Tosatto SCE;Wu CH;Bateman A;Finn RD
通讯作者：
Finn RD
影响因子：
14.9
作者：
Arita M;Karsch-Mizrachi I;Cochrane G
通讯作者：
Cochrane G
影响因子：
14.9
作者：
Howe KL;Achuthan P;Allen J;Allen J;Alvarez-Jarreta J;Amode MR;Armean IM;Azov AG;Bennett R;Bhai J;Billis K;Boddu S;Charkhchi M;Cummins C;Da Rin Fioretto L;Davidson C;Dodiya K;El Houdaigui B;Fatima R;Gall A;Garcia Giron C;Grego T;Guijarro-Clarke C;Haggerty L;Hemrom A;Hourlier T;Izuogu OG;Juettemann T;Kaikala V;Kay M;Lavidas I;Le T;Lemos D;Gonzalez Martinez J;Marugán JC;Maurel T;McMahon AC;Mohanan S;Moore B;Muffato M;Oheh DN;Paraschas D;Parker A;Parton A;Prosovetskaia I;Sakthivel MP;Salam AIA;Schmitt BM;Schuilenburg H;Sheppard D;Steed E;Szpak M;Szuba M;Taylor K;Thormann A;Threadgold G;Walts B;Winterbottom A;Chakiachvili M;Chaubal A;De Silva N;Flint B;Frankish A;Hunt SE;IIsley GR;Langridge N;Loveland JE;Martin FJ;Mudge JM;Morales J;Perry E;Ruffier M;Tate J;Thybert D;Trevanion SJ;Cunningham F;Yates AD;Zerbino DR;Flicek P
通讯作者：
Flicek P
影响因子：
14.9
作者：
Larkin A;Marygold SJ;Antonazzo G;Attrill H;Dos Santos G;Garapati PV;Goodman JL;Gramates LS;Millburn G;Strelets VB;Tabone CJ;Thurmond J;FlyBase Consortium
通讯作者：
FlyBase Consortium